Detailed information NTG0218669

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MS8345_RS15720
• Genome accession: NZ_CP025401
• Coordinates: 2985468..2986460 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MS8345
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2980468..2991460

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MS8345_RS15700 (MS8345_02927)	ygbM	2981099..2981875 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
MS8345_RS15705 (MS8345_02928)	ygbN	2981964..2983328 (+)	1365	WP_000104443.1	GntP family transporter	-
MS8345_RS15710 (MS8345_02929)	-	2983471..2984514 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
MS8345_RS15715 (MS8345_02930)	-	2984739..2985290 (+)	552	WP_001179442.1	flavodoxin family protein	-
MS8345_RS15720 (MS8345_02931)	rpoS	2985468..2986460 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
MS8345_RS15725 (MS8345_02932)	nlpD	2986523..2987617 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
MS8345_RS15730 (MS8345_02933)	pcm	2987802..2988428 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
MS8345_RS15735 (MS8345_02934)	surE	2988422..2989183 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
MS8345_RS15740 (MS8345_02935)	truD	2989164..2990213 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
MS8345_RS15745 (MS8345_02936)	ispF	2990210..2990689 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MS8345_RS15750 (MS8345_02937)	ispD	2990689..2991399 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=218669 MS8345_RS15720 WP_000081550.1 2985468..2986460(-) (rpoS) [Escherichia coli strain MS8345]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=218669 MS8345_RS15720 WP_000081550.1 2985468..2986460(-) (rpoS) [Escherichia coli strain MS8345]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715