Detailed information NTG0218645

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: BZ168_RS14650
• Genome accession: NZ_CP019870
• Coordinates: 3268027..3268734 (-)
• Length: 235 a.a.
• NCBI ID: WP_009888460.1
• Uniprot ID: A0A9Q8EBL8
• Organism: Clostridioides difficile strain BR81
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 3263027..3273734

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BZ168_RS14635 (BZ168_14645)	-	3263462..3263932 (-)	471	WP_003439176.1	VOC family protein	-
BZ168_RS14640 (BZ168_14650)	-	3264530..3264919 (-)	390	WP_003426867.1	BlaI/MecI/CopY family transcriptional regulator	-
BZ168_RS14645 (BZ168_14655)	-	3266576..3267982 (-)	1407	WP_021378163.1	sensor histidine kinase	-
BZ168_RS14650 (BZ168_14660)	scnR	3268027..3268734 (-)	708	WP_009888460.1	response regulator transcription factor	Regulator
BZ168_RS14655 (BZ168_14665)	-	3268896..3269819 (+)	924	WP_003439184.1	ABC transporter ATP-binding protein	-
BZ168_RS14660 (BZ168_14670)	-	3269819..3270580 (+)	762	WP_003439185.1	ABC transporter permease	-
BZ168_RS14665 (BZ168_14675)	-	3270592..3271329 (+)	738	WP_003439186.1	ABC transporter permease	-
BZ168_RS14675 (BZ168_14685)	-	3272207..3272476 (+)	270	WP_003426848.1	DUF3795 domain-containing protein	-
BZ168_RS14680 (BZ168_14690)	cdd1	3272694..3272939 (-)	246	WP_004454326.1	protein Cdd1	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 26716.17 Da
• Isoelectric Point: 6.1467

>NTDB_id=218645 BZ168_RS14650 WP_009888460.1 3268027..3268734(-) (scnR) [Clostridioides difficile strain BR81]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide

• Length: 708 bp

>NTDB_id=218645 BZ168_RS14650 WP_009888460.1 3268027..3268734(-) (scnR) [Clostridioides difficile strain BR81]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGGTTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGAGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-232)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	48.918	98.298	0.481
micA	Streptococcus pneumoniae Cp1015	40	100	0.4
vicR	Streptococcus mutans UA159	38.362	98.723	0.379