Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MS8345_RS02575 Genome accession   NZ_CP025401
Coordinates   515828..516433 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain MS8345     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 510828..521433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS8345_RS30770 - 511382..511480 (+) 99 Protein_476 hypothetical protein -
  MS8345_RS02540 (MS8345_00470) rsmS 511533..511694 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  MS8345_RS02545 (MS8345_00471) priC 511708..512235 (-) 528 WP_000844868.1 primosomal replication protein N'' -
  MS8345_RS02550 (MS8345_00472) ybaN 512305..512682 (+) 378 WP_001188900.1 DUF454 family protein -
  MS8345_RS02560 (MS8345_00473) apt 512835..513386 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  MS8345_RS02565 (MS8345_00474) dnaX 513515..515446 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  MS8345_RS02570 (MS8345_00475) ybaB 515499..515828 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  MS8345_RS02575 (MS8345_00476) recR 515828..516433 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  MS8345_RS02580 (MS8345_00477) htpG 516543..518417 (+) 1875 WP_000678211.1 molecular chaperone HtpG -
  MS8345_RS02590 (MS8345_00478) adk 518598..519242 (+) 645 WP_001331495.1 adenylate kinase -
  MS8345_RS02595 (MS8345_00479) hemH 519374..520336 (+) 963 WP_001250114.1 ferrochelatase -
  MS8345_RS02600 (MS8345_00480) aes 520333..521292 (-) 960 WP_000801795.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=218638 MS8345_RS02575 WP_001195025.1 515828..516433(+) (recR) [Escherichia coli strain MS8345]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=218638 MS8345_RS02575 WP_001195025.1 515828..516433(+) (recR) [Escherichia coli strain MS8345]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment