Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CDIF29632_RS03740 Genome accession   NZ_CP019860
Coordinates   747835..748542 (+) Length   235 a.a.
NCBI ID   WP_021402347.1    Uniprot ID   -
Organism   Clostridioides difficile strain DSM 29632     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 742835..753542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDIF29632_RS03710 (CDIF29632_00725) cdd1 743630..743875 (+) 246 WP_009888450.1 protein Cdd1 -
  CDIF29632_RS03715 (CDIF29632_00726) - 744093..744362 (-) 270 WP_003426848.1 DUF3795 domain-containing protein -
  CDIF29632_RS03725 (CDIF29632_00727) - 745240..745977 (-) 738 WP_003439186.1 ABC transporter permease -
  CDIF29632_RS03730 (CDIF29632_00728) - 745989..746750 (-) 762 WP_003439185.1 ABC transporter permease -
  CDIF29632_RS03735 (CDIF29632_00729) - 746750..747673 (-) 924 WP_025985748.1 ABC transporter ATP-binding protein -
  CDIF29632_RS03740 (CDIF29632_00730) scnR 747835..748542 (+) 708 WP_021402347.1 response regulator transcription factor Regulator
  CDIF29632_RS03745 (CDIF29632_00731) - 748587..749993 (+) 1407 WP_009895701.1 sensor histidine kinase -
  CDIF29632_RS03750 (CDIF29632_00732) - 751661..752050 (+) 390 WP_003426867.1 BlaI/MecI/CopY family transcriptional regulator -
  CDIF29632_RS03755 (CDIF29632_00733) - 752648..753118 (+) 471 WP_070538482.1 VOC family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26688.16 Da        Isoelectric Point: 6.1467

>NTDB_id=218549 CDIF29632_RS03740 WP_021402347.1 747835..748542(+) (scnR) [Clostridioides difficile strain DSM 29632]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVKVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=218549 CDIF29632_RS03740 WP_021402347.1 747835..748542(+) (scnR) [Clostridioides difficile strain DSM 29632]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAAGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

48.918

98.298

0.481
  micA Streptococcus pneumoniae Cp1015

40

100

0.4
  vicR Streptococcus mutans UA159

38.362

98.723

0.379

Multiple sequence alignment