Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   CR922_RS01580 Genome accession   NZ_CP025400
Coordinates   296217..296960 (+) Length   247 a.a.
NCBI ID   WP_101361231.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EPS     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 291217..301960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR922_RS01560 dinB 292052..293155 (+) 1104 WP_011227504.1 DNA polymerase IV -
  CR922_RS01565 - 293441..293674 (+) 234 WP_002947030.1 hypothetical protein -
  CR922_RS01570 - 294255..295082 (+) 828 WP_041827091.1 transporter substrate-binding domain-containing protein -
  CR922_RS01575 - 295471..296217 (+) 747 WP_095559509.1 amino acid ABC transporter permease -
  CR922_RS01580 amiE 296217..296960 (+) 744 WP_101361231.1 amino acid ABC transporter ATP-binding protein Regulator
  CR922_RS01585 - 297175..297399 (+) 225 WP_011226468.1 DUF4059 family protein -
  CR922_RS01590 trxB 297432..298385 (+) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  CR922_RS01595 rsmD 298476..299075 (+) 600 WP_011227500.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CR922_RS01600 coaD 299109..299606 (+) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  CR922_RS01605 sepM 299584..300660 (+) 1077 WP_011226464.1 SepM family pheromone-processing serine protease Regulator
  CR922_RS01610 - 300745..301689 (+) 945 WP_011226463.1 TIGR01212 family radical SAM protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27791.94 Da        Isoelectric Point: 5.4718

>NTDB_id=218549 CR922_RS01580 WP_101361231.1 296217..296960(+) (amiE) [Streptococcus thermophilus strain EPS]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTVLDNVKEGLKIVKKLSDDEATKIAKEELTKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=218549 CR922_RS01580 WP_101361231.1 296217..296960(+) (amiE) [Streptococcus thermophilus strain EPS]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGAAACAATTACCAAGGAGCAAATCCTTACTCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGTCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCACTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364

Multiple sequence alignment