Detailed information NTG0021854

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RS_RS01905
• Genome accession: NC_003295
• Coordinates: 413924..415063 (-)
• Length: 379 a.a.
• NCBI ID: WP_028860160.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum GMI1000
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 408924..420063

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RS_RS01875 (RS03349)	-	409624..410886 (-)	1263	WP_011000344.1	CmpA/NrtA family ABC transporter substrate-binding protein	-
RS_RS01885 (RS03350)	-	411163..411789 (-)	627	WP_038938076.1	ANTAR domain-containing response regulator	-
RS_RS01890 (RS03351)	-	411937..412638 (+)	702	WP_011000346.1	fumarylacetoacetate hydrolase family protein	-
RS_RS01895 (RS03352)	maiA	412642..413292 (+)	651	WP_011000347.1	maleylacetoacetate isomerase	-
RS_RS01900 (RS03353)	-	413289..413927 (+)	639	WP_011000348.1	LysE/ArgO family amino acid transporter	-
RS_RS01905 (RS03354)	pilA	413924..415063 (-)	1140	WP_028860160.1	signal recognition particle-docking protein FtsY	Machinery gene
RS_RS01910 (RS03355)	-	415124..416629 (+)	1506	WP_011000350.1	M16 family metallopeptidase	-
RS_RS01915 (RS03356)	-	416629..417972 (+)	1344	WP_011000351.1	M16 family metallopeptidase	-
RS_RS01920 (RS03357)	rsmD	418053..418700 (+)	648	WP_011000352.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RS_RS01925 (RS03358)	coaD	418896..419402 (+)	507	WP_003262550.1	pantetheine-phosphate adenylyltransferase	-
RS_RS01930 (RS03359)	-	419453..419701 (+)	249	WP_011000353.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 379 a.a.
• Molecular weight: 40141.37 Da
• Isoelectric Point: 5.8101

>NTDB_id=21854 RS_RS01905 WP_028860160.1 413924..415063(-) (pilA) [Ralstonia pseudosolanacearum GMI1000]
MFSFWKKRKAEPQPAAEPAPPAAAPEAAQAPAPAPAPVAAPVPTPAPAPVAVPDTPAAPAALDMQADDIETVPTPPVVEQ
ARKGWMSRLRSGLSKTSKSLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLDELRRRVKAQRIETAEGVKTALRDL
LIELLHPLEKTMVLGRDQPTVIMIAGVNGAGKTTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQ
ESGDPAAVIFDAVNAARARGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQNALAQVKAFD
DALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALLG

Nucleotide

• Length: 1140 bp

>NTDB_id=21854 RS_RS01905 WP_028860160.1 413924..415063(-) (pilA) [Ralstonia pseudosolanacearum GMI1000]
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCAGAGCCCCAGCCGGCTGCCGAACCGGCGCCGCCCGCCGCCGCGCCCGAAGC
CGCACAGGCTCCTGCTCCTGCCCCGGCCCCGGTTGCCGCCCCCGTCCCCACGCCGGCTCCCGCCCCGGTCGCCGTGCCGG
ATACGCCGGCCGCGCCGGCTGCGCTGGACATGCAGGCCGATGACATCGAGACCGTGCCGACGCCGCCCGTGGTGGAGCAG
GCGCGCAAGGGCTGGATGTCGCGCCTGCGCTCGGGCCTGTCGAAGACCAGCAAGAGCCTGACCACGCTGTTCGTCGGCGT
GAAGGTGGACGAGGCGCTGTTCGAGGAGCTGGAGACCGCGCTGCTGATGGCCGATGCCGGCGTCGATGCCACCGAGTACC
TGCTGGACGAACTGCGCCGCCGCGTGAAGGCCCAGCGCATCGAGACCGCCGAGGGCGTGAAGACCGCGCTGCGCGACCTG
CTCATCGAGCTGCTGCATCCGCTCGAAAAGACCATGGTGCTCGGCCGCGACCAGCCGACGGTGATCATGATCGCGGGCGT
CAACGGCGCCGGCAAGACCACCAGCATCGGCAAGCTGTGCAAGCACTTCCAGACCTATGGACAGTCCGTGCTGCTGGCCG
CCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTGGTGATCTGGGGCCAGCGCAACAACGTGACCGTGGTGGCGCAG
GAATCGGGCGACCCGGCCGCCGTGATCTTCGACGCGGTGAACGCGGCGCGCGCCCGCGGCATCGACATCGTCATGGCCGA
CACCGCCGGCCGCCTTCCGACCCAGCTGCACCTGATGGAAGAGCTGAAGAAGGTGCGCCGCGTGATCGGCAAAGCGATGG
CGACCGCGCCGCACGAGACCCTGCTGGTGATCGACGCCAACACCGGCCAGAACGCGCTGGCGCAGGTGAAAGCCTTCGAC
GATGCGCTCGGCCTGACCGGCCTGATCGTCACCAAGCTGGACGGCACCGCCAAGGGCGGCATCCTGGCCGCCATCGCGCG
GCAGCGGCCGGTGCCGGTATATTTCATCGGCGTGGGCGAGCAGGTGGAAGACCTGCAGCCGTTCTCCGCGCGCGAATTCG
CCGACGCGCTGCTGGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (179-379)

• SRP54-type protein, helical bundle domain (SRP54_N) (98-159)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.163	100	0.573