Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B1H21_RS15550 Genome accession   NZ_CP019839
Coordinates   3191128..3191754 (-) Length   208 a.a.
NCBI ID   WP_008499926.1    Uniprot ID   A0AAX1WHW5
Organism   Enterobacter roggenkampii strain R11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3186128..3196754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1H21_RS15535 (B1H21_15715) helD 3186365..3188419 (-) 2055 WP_021240854.1 DNA helicase IV -
  B1H21_RS15540 (B1H21_15720) - 3188543..3188989 (+) 447 WP_008499924.1 YccF domain-containing protein -
  B1H21_RS15545 (B1H21_15725) yccS 3189009..3191171 (+) 2163 WP_063418689.1 YccS family putative transporter -
  B1H21_RS15550 (B1H21_15730) sxy/tfoX 3191128..3191754 (-) 627 WP_008499926.1 TfoX/Sxy family DNA transformation protein Regulator
  B1H21_RS15555 (B1H21_15735) sulA 3191972..3192481 (+) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  B1H21_RS15560 (B1H21_15740) ompA 3192836..3193891 (+) 1056 WP_008499928.1 porin OmpA -
  B1H21_RS15565 (B1H21_15745) matP 3193956..3194408 (-) 453 WP_008499929.1 macrodomain Ter protein MatP -
  B1H21_RS15570 (B1H21_15750) - 3194595..3196355 (+) 1761 WP_063418688.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23885.49 Da        Isoelectric Point: 9.6439

>NTDB_id=218480 B1H21_RS15550 WP_008499926.1 3191128..3191754(-) (sxy/tfoX) [Enterobacter roggenkampii strain R11]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=218480 B1H21_RS15550 WP_008499926.1 3191128..3191754(-) (sxy/tfoX) [Enterobacter roggenkampii strain R11]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCGGTCGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTTTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAGGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCTATCGAAGGGCTGCATGAGGCGGCGCTCCCGGCAGGTAT
CCGCCGGGAACTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567

Multiple sequence alignment