Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   CR921_RS05000 Genome accession   NZ_CP025399
Coordinates   938063..939133 (-) Length   356 a.a.
NCBI ID   WP_011681135.1    Uniprot ID   Q03KP9
Organism   Streptococcus thermophilus strain GABA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 933063..944133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR921_RS04985 pstB 933788..934546 (+) 759 WP_011681133.1 phosphate ABC transporter ATP-binding protein PstB -
  CR921_RS04990 phoU 934574..935227 (+) 654 WP_002950747.1 phosphate signaling complex protein PhoU -
  CR921_RS04995 - 935361..937901 (+) 2541 WP_011225973.1 M1 family metallopeptidase -
  CR921_RS05000 xerS 938063..939133 (-) 1071 WP_011681135.1 tyrosine recombinase XerS Machinery gene
  CR921_RS05005 - 939358..940347 (-) 990 WP_011681136.1 lipoate--protein ligase -
  CR921_RS10390 - 940816..941205 (+) 390 WP_232085832.1 hypothetical protein -
  CR921_RS05015 - 941147..941587 (+) 441 WP_223899653.1 hypothetical protein -
  CR921_RS05020 glgP 941693..943957 (-) 2265 WP_014608303.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41505.64 Da        Isoelectric Point: 9.6822

>NTDB_id=218476 CR921_RS05000 WP_011681135.1 938063..939133(-) (xerS) [Streptococcus thermophilus strain GABA]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVGKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=218476 CR921_RS05000 WP_011681135.1 938063..939133(-) (xerS) [Streptococcus thermophilus strain GABA]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATATAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAACTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTGCTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTGAATATGGCAAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGGGA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03KP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.303

100

0.823