Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   SAO46_RS10155 Genome accession   NZ_CP025395
Coordinates   1988503..1989216 (+) Length   237 a.a.
NCBI ID   WP_001031451.1    Uniprot ID   -
Organism   Staphylococcus aureus O46     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1983503..1994216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAO46_RS10085 - 1983661..1984146 (-) 486 Protein_1883 putative HNHc nuclease -
  SAO46_RS10090 (SAO46_01841) ssb 1984169..1984495 (-) 327 Protein_1884 single-stranded DNA-binding protein -
  SAO46_RS10095 (SAO46_01842) - 1984495..1985133 (-) 639 WP_001043063.1 ERF family protein -
  SAO46_RS10100 (SAO46_01843) - 1985133..1985612 (-) 480 WP_000002514.1 siphovirus Gp157 family protein -
  SAO46_RS10105 (SAO46_01844) - 1985627..1985887 (-) 261 WP_000291086.1 DUF1108 family protein -
  SAO46_RS10110 (SAO46_01845) - 1985981..1986142 (-) 162 WP_000048119.1 DUF1270 family protein -
  SAO46_RS10115 (SAO46_01846) - 1986155..1986418 (-) 264 WP_001124184.1 helix-turn-helix domain-containing protein -
  SAO46_RS10120 - 1986468..1986551 (-) 84 Protein_1890 MW1434 family type I TA system toxin -
  SAO46_RS10125 (SAO46_01847) - 1986563..1986760 (-) 198 WP_001202628.1 hypothetical protein -
  SAO46_RS10130 (SAO46_01848) - 1986776..1987525 (-) 750 WP_101305156.1 phage antirepressor KilAC domain-containing protein -
  SAO46_RS10135 (SAO46_01849) - 1987586..1987828 (+) 243 WP_000498529.1 hypothetical protein -
  SAO46_RS10140 - 1987776..1988084 (-) 309 WP_001025399.1 hypothetical protein -
  SAO46_RS10145 (SAO46_01850) - 1988100..1988369 (-) 270 WP_000854067.1 helix-turn-helix transcriptional regulator -
  SAO46_RS10150 - 1988388..1988540 (-) 153 Protein_1896 transcriptional regulator -
  SAO46_RS10155 (SAO46_01851) irvR 1988503..1989216 (+) 714 WP_001031451.1 XRE family transcriptional regulator Regulator
  SAO46_RS14375 (SAO46_01852) - 1989228..1989374 (+) 147 WP_001049401.1 hypothetical protein -
  SAO46_RS10160 - 1989371..1989556 (+) 186 WP_000100503.1 hypothetical protein -
  SAO46_RS10165 (SAO46_01854) - 1989592..1990575 (+) 984 WP_000439124.1 DUF3644 domain-containing protein -
  SAO46_RS10170 (SAO46_01855) - 1990754..1991800 (+) 1047 WP_001145714.1 tyrosine-type recombinase/integrase -
  SAO46_RS10175 (SAO46_01856) yfkAB 1991845..1992990 (+) 1146 WP_001245446.1 radical SAM/CxCxxxxC motif protein YfkAB -
  SAO46_RS10180 (SAO46_01857) - 1993250..1993780 (-) 531 WP_000184381.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27026.64 Da        Isoelectric Point: 5.4202

>NTDB_id=218415 SAO46_RS10155 WP_001031451.1 1988503..1989216(+) (irvR) [Staphylococcus aureus O46]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLDEQNSKGDNVVDINSYKQDKTPVNVNGCVSAGVGERLHDETLFTEMVKAPVPPHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKEYRDLHFYRNESVRLVGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=218415 SAO46_RS10155 WP_001031451.1 1988503..1989216(+) (irvR) [Staphylococcus aureus O46]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTAGATGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAAGATAAAACTCCAGTTAATGTCAATGGATGTGTCTCCGCTGGTGTAG
GAGAACGACTGCACGATGAAACGCTATTCACTGAAATGGTTAAAGCCCCTGTTCCTCCACATGATTTAGCATTAAAAGTT
AATGGCGATTCTATGGAGCCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCATAATATAAAGAATGGGCA
AATAGGTATATTCATCATCGAAGAAGAGGCTTATGTTAAGAAAGTCTTCGTTGAGGATGACAGATTGACTTTAGTCTCAT
TGAACAAAGAATACCGCGACCTTCACTTTTATAGAAATGAAAGTGTGAGATTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

32.857

100

0.388