Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   B0D95_RS01515 Genome accession   NZ_CP019799
Coordinates   327613..328983 (+) Length   456 a.a.
NCBI ID   WP_078042247.1    Uniprot ID   A0A1U9N5W9
Organism   Cellvibrio sp. PSBB023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 322613..333983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0D95_RS01505 (B0D95_01505) - 324114..326468 (+) 2355 WP_078042243.1 Ig-like domain-containing protein -
  B0D95_RS01510 (B0D95_01510) - 326684..327604 (+) 921 WP_078042244.1 hypothetical protein -
  B0D95_RS01515 (B0D95_01515) radA 327613..328983 (+) 1371 WP_078042247.1 DNA repair protein RadA Machinery gene
  B0D95_RS01520 (B0D95_01520) - 328990..329358 (-) 369 WP_078042249.1 PilZ domain-containing protein -
  B0D95_RS01525 (B0D95_01525) - 329406..329792 (-) 387 WP_078042250.1 PilZ domain-containing protein -
  B0D95_RS01530 (B0D95_01530) - 329977..330888 (+) 912 WP_078042251.1 ROK family protein -
  B0D95_RS01535 (B0D95_01535) - 330890..331765 (+) 876 WP_078042252.1 ABC transporter substrate-binding protein -
  B0D95_RS01540 (B0D95_01540) - 331788..332789 (+) 1002 WP_078042254.1 iron ABC transporter permease -
  B0D95_RS01545 (B0D95_01545) - 332786..333589 (+) 804 WP_210403669.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48820.23 Da        Isoelectric Point: 6.8924

>NTDB_id=218413 B0D95_RS01515 WP_078042247.1 327613..328983(+) (radA) [Cellvibrio sp. PSBB023]
MSTKTKSAFVCNECGADYKKWQGQCTECGAWNSLSEVRLGPTPTNRAAKFEGYAGGASGNKIQTLAEIALNEVPRFSSGT
GEFDRVLGGGFVPGSVVLIGGNPGAGKSTLLLQTLCNLARTMPALYITGEESLQQVAMRAQRLGLPTDQLQMLSETSVEA
ICAIAQKVTPKVMVIDSIQVMHMEDISSAPGSVSQVRESAAYLTRFAKQTGTVLILVGHVTKDGSLAGPKVLEHMIDCSI
LLEGDNDSRFRTLRGNKNRFGAVNELGVFAMTEQGMREVSNPSAIFLQRAEDAASGSVVMVMWEGTRPLLIEIQALVDDS
HLGNPRRVAVGMDQNRLAMLLAVLHRHGGIMVGDQDVFVNVVGGVKVMETSADLALLLAVVSSFRDRVLPQDLIVFGEVG
LSGEIRPVPSGHERLREAAKHGFKRAIVPFANAPRDKQLGIEVVAVKNLQEALAAL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=218413 B0D95_RS01515 WP_078042247.1 327613..328983(+) (radA) [Cellvibrio sp. PSBB023]
GTGAGCACTAAAACCAAAAGTGCGTTTGTCTGCAACGAGTGCGGTGCGGATTATAAAAAATGGCAGGGTCAGTGCACTGA
GTGTGGTGCCTGGAACAGTTTGAGTGAAGTGCGTTTGGGGCCAACGCCTACCAATCGCGCCGCTAAATTCGAAGGCTATG
CGGGCGGTGCCTCGGGCAACAAAATCCAAACCCTGGCAGAAATTGCCCTCAATGAAGTACCGCGTTTTAGCAGCGGCACC
GGTGAGTTTGATCGCGTATTGGGTGGTGGTTTTGTACCGGGTTCGGTGGTGCTTATTGGCGGAAATCCGGGTGCAGGAAA
ATCCACCTTGCTATTGCAGACATTGTGCAATCTGGCGCGCACTATGCCCGCGCTTTACATCACTGGTGAGGAGTCATTGC
AACAAGTCGCTATGCGCGCCCAGCGGTTGGGTTTGCCTACGGATCAGTTGCAAATGCTCAGTGAAACCAGTGTGGAAGCG
ATTTGCGCCATCGCCCAAAAAGTGACGCCCAAGGTGATGGTGATCGACTCCATCCAAGTCATGCACATGGAGGATATTTC
CTCGGCGCCGGGTTCGGTATCGCAAGTGCGTGAAAGCGCGGCGTATCTCACCCGTTTTGCCAAACAAACCGGCACCGTAT
TAATTCTGGTGGGGCACGTCACCAAAGACGGTTCGCTCGCTGGCCCCAAGGTGCTGGAGCATATGATCGATTGCTCGATC
CTGTTGGAAGGCGATAACGACTCGCGTTTCCGCACCTTGCGCGGCAATAAAAACCGTTTTGGCGCCGTGAACGAGCTGGG
TGTATTTGCGATGACCGAACAGGGCATGCGCGAGGTCAGCAACCCCTCGGCGATTTTTTTGCAGCGCGCAGAGGATGCCG
CCTCCGGCTCGGTGGTCATGGTGATGTGGGAGGGGACACGCCCGCTGCTGATTGAAATTCAGGCTTTGGTGGATGACAGT
CACTTGGGGAATCCGCGGCGCGTTGCTGTCGGCATGGATCAAAATCGTCTGGCGATGTTATTGGCGGTATTGCATCGCCA
CGGCGGCATTATGGTGGGCGATCAGGATGTGTTTGTGAATGTGGTTGGCGGCGTGAAAGTCATGGAAACCAGTGCTGACC
TGGCTTTGCTGTTAGCGGTTGTCTCCAGTTTTCGCGACCGGGTGTTGCCGCAGGATCTAATTGTGTTTGGCGAAGTGGGC
CTGTCCGGTGAAATTCGCCCGGTGCCCAGTGGCCATGAGCGGCTGCGTGAAGCGGCGAAGCACGGTTTTAAGCGGGCGAT
AGTGCCCTTTGCCAATGCCCCGCGCGACAAACAATTGGGTATTGAGGTAGTGGCCGTGAAAAACTTGCAGGAGGCCTTGG
CCGCGCTCTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

AAA domain (AAA_25)

(87-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U9N5W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.786

99.342

0.485
  radA Streptococcus pneumoniae Rx1

42.982

100

0.43
  radA Streptococcus pneumoniae D39

42.982

100

0.43
  radA Streptococcus pneumoniae R6

42.982

100

0.43
  radA Streptococcus pneumoniae TIGR4

42.982

100

0.43
  radA Streptococcus mitis SK321

43.142

99.123

0.428
  radA Streptococcus mitis NCTC 12261

42.763

100

0.428

Multiple sequence alignment