Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CXG97_RS21710 Genome accession   NZ_CP025328
Coordinates   4151397..4152065 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain ExPEC XM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4146397..4157065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXG97_RS21680 (CXG97_21675) rfaQ 4146575..4147633 (-) 1059 WP_000360396.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CXG97_RS21685 (CXG97_21680) waaA 4148046..4149323 (+) 1278 WP_000891546.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CXG97_RS21690 (CXG97_21685) coaD 4149331..4149810 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  CXG97_RS21695 (CXG97_21690) mutM 4149849..4150658 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CXG97_RS21700 (CXG97_21695) rpmG 4150756..4150923 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CXG97_RS21705 (CXG97_21700) rpmB 4150944..4151180 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CXG97_RS21710 (CXG97_21705) radC 4151397..4152065 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CXG97_RS21715 (CXG97_21710) coaBC 4152237..4153457 (+) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CXG97_RS21720 (CXG97_21715) dut 4153435..4153893 (+) 459 WP_000976066.1 dUTP diphosphatase -
  CXG97_RS21725 (CXG97_21720) slmA 4154000..4154596 (+) 597 WP_000818598.1 nucleoid occlusion factor SlmA -
  CXG97_RS21730 (CXG97_21725) pyrE 4154633..4155274 (-) 642 WP_000806174.1 orotate phosphoribosyltransferase -
  CXG97_RS21735 (CXG97_21730) rph 4155340..4156056 (-) 717 WP_001247093.1 ribonuclease PH -
  CXG97_RS21745 (CXG97_21740) yicC 4156183..4157046 (+) 864 WP_000621332.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=218315 CXG97_RS21710 WP_001297375.1 4151397..4152065(-) (radC) [Escherichia coli strain ExPEC XM]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=218315 CXG97_RS21710 WP_001297375.1 4151397..4152065(-) (radC) [Escherichia coli strain ExPEC XM]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GTTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496