Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B0915_RS06120 Genome accession   NZ_CP019778
Coordinates   1206340..1206969 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NCTC86     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1201340..1211969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0915_RS06095 (B0915_06205) ycbZ 1201741..1203501 (-) 1761 WP_000156518.1 Lon protease family protein -
  B0915_RS06100 (B0915_06210) matP 1203687..1204139 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  B0915_RS06105 (B0915_06215) ompA 1204215..1205255 (-) 1041 WP_000750416.1 porin OmpA -
  B0915_RS06115 (B0915_06225) sulA 1205612..1206121 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  B0915_RS06120 (B0915_06230) sxy/tfoX 1206340..1206969 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  B0915_RS06125 (B0915_06235) yccS 1206932..1209094 (-) 2163 WP_000875061.1 YccS family putative transporter -
  B0915_RS06130 (B0915_06240) yccF 1209104..1209550 (-) 447 WP_001261235.1 YccF domain-containing protein -
  B0915_RS06135 (B0915_06245) helD 1209673..1211727 (+) 2055 WP_078045951.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=218310 B0915_RS06120 WP_000839153.1 1206340..1206969(+) (sxy/tfoX) [Escherichia coli strain NCTC86]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=218310 B0915_RS06120 WP_000839153.1 1206340..1206969(+) (sxy/tfoX) [Escherichia coli strain NCTC86]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment