Detailed information NTG0218294

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CXG97_RS16360
• Genome accession: NZ_CP025328
• Coordinates: 3096664..3097656 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ExPEC XM
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3091664..3102656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXG97_RS16340 (CXG97_16335)	ygbM	3092296..3093071 (+)	776	Protein_3033	HPr family phosphocarrier protein	-
CXG97_RS16345 (CXG97_16340)	ygbN	3093160..3094524 (+)	1365	WP_000104443.1	GntP family transporter	-
CXG97_RS16350 (CXG97_16345)	-	3094667..3095710 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
CXG97_RS16355 (CXG97_16350)	-	3095935..3096486 (+)	552	WP_001179442.1	flavodoxin family protein	-
CXG97_RS16360 (CXG97_16355)	rpoS	3096664..3097656 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CXG97_RS16365 (CXG97_16360)	nlpD	3097719..3098813 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CXG97_RS16370 (CXG97_16365)	pcm	3098998..3099624 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
CXG97_RS16375 (CXG97_16370)	surE	3099618..3100379 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CXG97_RS16380 (CXG97_16375)	truD	3100360..3101409 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
CXG97_RS16385 (CXG97_16380)	ispF	3101406..3101885 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CXG97_RS16390 (CXG97_16385)	ispD	3101885..3102595 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=218294 CXG97_RS16360 WP_000081550.1 3096664..3097656(-) (rpoS) [Escherichia coli strain ExPEC XM]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=218294 CXG97_RS16360 WP_000081550.1 3096664..3097656(-) (rpoS) [Escherichia coli strain ExPEC XM]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715