Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AZI11_RS07940 Genome accession   NZ_CP019734
Coordinates   1598243..1600048 (-) Length   601 a.a.
NCBI ID   WP_085769116.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain TMW 1.2108     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593243..1605048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZI11_RS07915 (AZI11_07915) - 1593839..1594738 (-) 900 WP_042516744.1 RluA family pseudouridine synthase -
  AZI11_RS07920 (AZI11_07920) - 1594735..1595538 (-) 804 WP_021740943.1 NAD kinase -
  AZI11_RS07925 (AZI11_07925) - 1595540..1596199 (-) 660 WP_011668198.1 GTP pyrophosphokinase family protein -
  AZI11_RS07930 (AZI11_07930) - 1596526..1597164 (+) 639 WP_024526733.1 ClpXP adapter SpxH family protein -
  AZI11_RS07935 (AZI11_07935) - 1597326..1598189 (+) 864 WP_085769115.1 DegV family protein -
  AZI11_RS07940 (AZI11_07940) pepF 1598243..1600048 (-) 1806 WP_085769116.1 oligoendopeptidase F Regulator
  AZI11_RS07945 (AZI11_07945) - 1600115..1601209 (-) 1095 WP_085769117.1 competence protein CoiA -
  AZI11_RS07950 (AZI11_07950) trmB 1601336..1601983 (-) 648 WP_021740936.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AZI11_RS07955 (AZI11_07955) - 1602049..1602840 (-) 792 WP_011668204.1 phosphotransferase family protein -
  AZI11_RS07960 (AZI11_07960) - 1602902..1604128 (-) 1227 WP_085769118.1 ABC transporter permease -
  AZI11_RS07965 (AZI11_07965) - 1604125..1604859 (-) 735 WP_035464041.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67091.09 Da        Isoelectric Point: 4.8246

>NTDB_id=218218 AZI11_RS07940 WP_085769116.1 1598243..1600048(-) (pepF) [Levilactobacillus brevis strain TMW 1.2108]
MKQIPKRSEVPTALTWDLTTIFPDEAAFKTAIAAIKAQTTVVAGLKGQLAQSGAALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNDPRLAGYQHVFDVLGQQRAHTLSVAEEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNDHLDSLHRYVNLRKEILALPQLHMYDLYTPITGEPSLKYTYQE
AQEMALKALAVLGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLAYLKAGSSA
LPLDVMKQADVDMTQPGYLQTAFATFDERLAEFTQLAHELN

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=218218 AZI11_RS07940 WP_085769116.1 1598243..1600048(-) (pepF) [Levilactobacillus brevis strain TMW 1.2108]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCACGGCACTGACTTGGGACCTGACAACTATTTTTCCCGACGAGGCAGC
TTTTAAGACCGCAATTGCCGCGATTAAAGCGCAAACAACGGTTGTGGCCGGCTTGAAGGGACAATTGGCCCAAAGTGGGG
CCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATACGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCGGCCCAAGCATTAATGGGGCAGGCCGAGAGCTTGGTGGCAACTGTGGGTGCCGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCTCTGTCAGCGGATCAGCTGCAAACGCTGATTGATAACGACCCCCGGCTAG
CAGGTTATCAGCATGTGTTTGACGTATTGGGCCAGCAACGGGCACATACGCTGTCAGTGGCGGAGGAAAAATTGTTAGCG
GGGGCTAGTGATATCTTTGGTGCGTCTGCTAAAACTTATAGTGTGCTGAGTGATGCTGATCTAAAGTTTCCAGTTGTTCA
AGACGAGGCCGGCAACGATGTGCGACTGTCAGAAGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCTTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCTGCAACCTTGGCGAGTGAAGTCAAA
ACGCATAATTTTAGCGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCCGCAATGAGTCGCAATAATGTGCCAGCAGT
GGTCTATGATACCCTGGTAGAAACAGTCAATGATCATTTAGACTCACTGCATCGCTATGTTAATTTGCGCAAAGAGATTT
TGGCCTTGCCGCAACTGCACATGTACGACCTGTATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAA
GCACAAGAGATGGCGTTAAAGGCACTAGCAGTTTTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGTCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAGCGGACGGGCGCTTACTCAGGCGGGATGTATGATACCAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAAGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTACCTGTTGAAAACCCAGACTGACCCCAAGGTGCGAGCTTACGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGCCAGACGCAGTTCGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACG
GCTGACTTCATGAGTGATTTCTACGGTAAACTTAATCAGCGTTATTACGGTGATGGGGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCAGCGGCCACGA
CGTTATCGCAACGAATTTTGAGTGGTGACGAGGCAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCAGGAAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGACGTCGATATGACGCAACCGGGCTATTTGCAGACGGCTTTTGCAACGTTCGA
CGAGCGCTTGGCAGAATTCACGCAATTGGCGCATGAATTAAACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-584)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.831

98.17

0.489

Multiple sequence alignment