Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC42_RS06225 Genome accession   NZ_CP025318
Coordinates   1178210..1178725 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain FORC_042     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1173210..1183725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC42_RS06180 (FORC42_1149) csrA 1173662..1173847 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FORC42_RS06210 (FORC42_1150) yqaB 1175440..1176006 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FORC42_RS06215 (FORC42_1151) yqaA 1176003..1176431 (+) 429 WP_001287454.1 YqaA family protein -
  FORC42_RS06220 (FORC42_1152) gshA 1176504..1178060 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FORC42_RS06225 (FORC42_1153) luxS 1178210..1178725 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  FORC42_RS06230 (FORC42_1154) emrB 1178789..1180327 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FORC42_RS06235 (FORC42_1155) emrA 1180344..1181516 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FORC42_RS06240 (FORC42_1156) emrR 1181643..1182173 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FORC42_RS06245 (FORC42_1157) ygaH 1182264..1182599 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FORC42_RS06250 (FORC42_1158) ygaZ 1182589..1183326 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=218201 FORC42_RS06225 WP_001130207.1 1178210..1178725(+) (luxS) [Escherichia coli strain FORC_042]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=218201 FORC42_RS06225 WP_001130207.1 1178210..1178725(+) (luxS) [Escherichia coli strain FORC_042]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731