Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   CXQ83_RS07345 Genome accession   NZ_CP025281
Coordinates   1414311..1414907 (-) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain YH503     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1409311..1419907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXQ83_RS07325 (CXQ83_07280) - 1410066..1410830 (+) 765 WP_002781156.1 TIGR02757 family protein -
  CXQ83_RS07330 (CXQ83_07285) - 1410833..1411597 (+) 765 WP_002784060.1 TSUP family transporter -
  CXQ83_RS07335 (CXQ83_07290) ctsF 1411594..1412769 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  CXQ83_RS07340 (CXQ83_07295) ctsE 1412756..1414318 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  CXQ83_RS07345 (CXQ83_07300) ctsX 1414311..1414907 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  CXQ83_RS07350 (CXQ83_07305) ctsP 1414904..1415500 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  CXQ83_RS07355 (CXQ83_07310) mshL 1415493..1416910 (-) 1418 Protein_1425 pilus (MSHA type) biogenesis protein MshL -
  CXQ83_RS07360 (CXQ83_07315) ctsR 1416888..1417199 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=218169 CXQ83_RS07345 WP_002779313.1 1414311..1414907(-) (ctsX) [Campylobacter coli strain YH503]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=218169 CXQ83_RS07345 WP_002779313.1 1414311..1414907(-) (ctsX) [Campylobacter coli strain YH503]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434