Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LIN_RS11785 Genome accession   NC_003212
Coordinates   2321485..2323290 (-) Length   601 a.a.
NCBI ID   WP_010991115.1    Uniprot ID   A0AB73HBT0
Organism   Listeria innocua Clip11262     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2316485..2328290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN_RS11765 (lin2288) isdE 2317373..2318245 (-) 873 WP_041918393.1 heme ABC transporter substrate-binding protein IsdE -
  LIN_RS11770 (lin2289) - 2318332..2320053 (-) 1722 WP_003763504.1 NEAT domain-containing protein -
  LIN_RS11775 (lin2290) isdC 2320066..2320692 (-) 627 WP_003763505.1 heme uptake protein IsdC -
  LIN_RS11780 (lin2291) - 2320908..2321174 (-) 267 WP_010991114.1 DUF3116 family protein -
  LIN_RS11785 (lin2292) pepF 2321485..2323290 (-) 1806 WP_010991115.1 oligoendopeptidase F Regulator
  LIN_RS11790 (lin2293) - 2323363..2324478 (-) 1116 WP_010991116.1 competence protein CoiA -
  LIN_RS11795 (lin2294) mecA 2324605..2325258 (-) 654 WP_003763512.1 adaptor protein MecA -
  LIN_RS11800 (lin2295) spxA 2325480..2325875 (-) 396 WP_003720569.1 transcriptional regulator SpxA -
  LIN_RS11805 (lin2296) - 2326195..2327163 (-) 969 WP_003763514.1 ABC transporter ATP-binding protein -
  LIN_RS11810 (lin2297) - 2327160..2328236 (-) 1077 WP_003722316.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68589.78 Da        Isoelectric Point: 4.6563

>NTDB_id=21815 LIN_RS11785 WP_010991115.1 2321485..2323290(-) (pepF) [Listeria innocua Clip11262]
MSKTNALPLREEVPENLTWDLTTIYPNDEAWEKAFTELQKITEESDQFKGRLAESSQTLYEALQFRDKAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEEIEITHGRYGKLLESNDPRVRKDAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYASTRGYKSAREAALSGNHIPETVYDSLLKSVNNNASLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YEEAKEIVLEALKPLGDEYQSILKEAFDSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQEGV
ALTADYLTETYFDINKKYYGDAIVYDAEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTAYIDFLKAG
SSDYPIDVLKKAGVDMATPNPVDDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=21815 LIN_RS11785 WP_010991115.1 2321485..2323290(-) (pepF) [Listeria innocua Clip11262]
TTGAGTAAAACGAATGCATTACCTTTAAGAGAAGAAGTTCCAGAAAATTTAACTTGGGATTTGACTACTATTTATCCAAA
TGATGAGGCTTGGGAAAAAGCCTTTACAGAATTACAAAAAATCACAGAAGAAAGCGATCAATTTAAAGGTCGTCTAGCGG
AAAGTAGCCAAACGCTTTATGAAGCATTACAATTTCGTGATAAAGCTTATGATTTAATTAGTAATTTATATGTATATGCT
CATTTGAAAATGGACCAGGATACAGCTAATGCGAAATACCAAGGATTACATAGTCGGGCAGGAAGTTTAGTTACAAAACT
AATGTCTGCATTATCTTATTATGATCCTGAAATTTTAGCGATGGATGAGAGTGTTTTAAAACAATTTTTAAATGAAAATA
AAGATTTGCAACTATATGCACACTTATTAGAGGAATTAAACTTAAGCCGACCTTATATTTTAAGTGAAAAAGAAGAGGCA
TTATTAGCGAATGCTGGCGAAGTTTTGGGTAGTTCTTCTAATACGTTTAACACATTAAATAATGCGGACATGAAGTTCCC
TACAATTAAAGATGAAAATGGCGAAGAGATTGAAATCACGCATGGTCGTTATGGTAAGTTGTTAGAAAGTAATGACCCGC
GTGTTCGTAAAGACGCGTTTCTTGGTGTGTATTCTGTTTATGAAGGATTAAAGAATACCTTAGCATCTACTTTAAATGGG
CAAGTGAAAAAATCTAATTTTTATGCTTCTACACGTGGATATAAGTCCGCTCGTGAGGCAGCACTTTCAGGAAATCATAT
CCCGGAGACAGTTTATGACTCTTTATTAAAATCAGTAAACAATAATGCTAGTTTACTTCATCGCTATGTAAAATTACGTA
AAGAATTGCTTGGATTAGAAGAACTTCATATGTATGATCTTTATACACCGCTTTCTGATGATGTTAATTTGGAATTCACT
TATGAGGAAGCAAAAGAGATTGTCCTTGAAGCCTTGAAACCACTTGGGGATGAATATCAATCGATTTTAAAAGAAGCTTT
TGATAGCCGCTGGATTGATGTGATGGAAAATAAAGGTAAACGAAGCGGGGCATACTCTTCTGGTTCATATAGTACAAATC
CATATATTTTATTGAATTGGCAAGATAATATTAATAATGTTTATACGCTAGCTCATGAACTTGGACATAGCGTTCACAGT
TACTATACAAGGAAGAACCAACCATTTGTTTATGGAGATTATTCGATTTTCTTAGCAGAAGTTGCTTCTACGACTAATGA
AAATTTACTGACGGACTATCTTTTGAAAAAATATGATGATCCGAAAGTACGCGCTTATTTGTTAAATCATTATTTAGATG
GATTTAAAGGAACTGTATTCCGTCAAACGCAATTTGCTGAGTTTGAGCATGCTATTCATCAAGCAGATCAAGAAGGAGTT
GCTTTAACAGCTGATTATTTAACAGAAACTTACTTTGATATTAATAAGAAATATTATGGTGATGCAATTGTTTATGATGC
TGAAATTGGTTATGAATGGTCTCGTATTCCACATTTTTACATGAACTATTATGTTTTCCAATATGCGACTGGGTTTTCGG
CAGCATCAGCTTTAAGTGCGAAAATTTTAACTGAAGGTCAAGAGGCGGTAACAGCTTATATTGACTTTTTGAAAGCAGGA
AGTTCTGATTATCCAATTGATGTGTTGAAAAAAGCAGGAGTCGATATGGCAACACCGAACCCTGTGGATGACGCGTTAAA
AGTTTTTGAACAAAGATTAGATGAATTAGAAAAACTAGTCAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.182

98.502

0.504

Multiple sequence alignment