Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CXQ83_RS02965 Genome accession   NZ_CP025281
Coordinates   575557..575937 (+) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain YH503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 570557..580937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXQ83_RS02945 (CXQ83_02935) - 570666..572600 (-) 1935 WP_002776352.1 RNB domain-containing ribonuclease -
  CXQ83_RS02950 (CXQ83_02940) ilvC 572723..573745 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  CXQ83_RS02955 (CXQ83_02945) - 573748..574800 (+) 1053 WP_002787384.1 divergent polysaccharide deacetylase family protein -
  CXQ83_RS02960 (CXQ83_02950) dprA 574790..575560 (+) 771 WP_002787385.1 DNA-processing protein DprA Machinery gene
  CXQ83_RS02965 (CXQ83_02955) dprB 575557..575937 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  CXQ83_RS02970 (CXQ83_02960) - 575948..576802 (+) 855 WP_370300696.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CXQ83_RS02975 (CXQ83_02965) msrA 577025..577525 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CXQ83_RS02980 (CXQ83_02970) ppa 577573..578091 (-) 519 WP_002776378.1 inorganic diphosphatase -
  CXQ83_RS02985 (CXQ83_02975) - 578101..578676 (-) 576 WP_002781658.1 adenylate kinase -
  CXQ83_RS02990 (CXQ83_02980) aspS 578673..580424 (-) 1752 WP_002787386.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=218142 CXQ83_RS02965 WP_002776373.1 575557..575937(+) (dprB) [Campylobacter coli strain YH503]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=218142 CXQ83_RS02965 WP_002776373.1 575557..575937(+) (dprB) [Campylobacter coli strain YH503]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421