Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BW727_RS02015 Genome accession   NZ_CP019728
Coordinates   412967..414778 (+) Length   603 a.a.
NCBI ID   WP_062471371.1    Uniprot ID   A0A1S6IMN0
Organism   Jeotgalibaca dankookensis strain EX-07     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 407967..419778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW727_RS01995 (BW727_100400) - 408535..409266 (+) 732 WP_062468342.1 sugar isomerase domain-containing protein -
  BW727_RS02000 (BW727_100401) - 409590..410234 (+) 645 WP_062468340.1 adaptor protein MecA -
  BW727_RS02005 (BW727_100402) - 410303..411628 (-) 1326 WP_062532880.1 IS3 family transposase -
  BW727_RS02010 (BW727_100403) - 411887..412915 (+) 1029 WP_062471374.1 competence protein CoiA -
  BW727_RS02015 (BW727_100404) pepF 412967..414778 (+) 1812 WP_062471371.1 oligoendopeptidase F Regulator
  BW727_RS02020 (BW727_100405) - 414819..415505 (-) 687 WP_062471368.1 DsbA family protein -
  BW727_RS02025 (BW727_100406) - 415688..416269 (-) 582 WP_062471365.1 CYTH domain-containing protein -
  BW727_RS02030 (BW727_100407) - 416427..417068 (+) 642 WP_062471362.1 GTP pyrophosphokinase -
  BW727_RS02035 (BW727_100408) - 417081..417908 (+) 828 WP_062471359.1 NAD kinase -
  BW727_RS02040 (BW727_100409) - 417910..418854 (+) 945 WP_159443125.1 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68896.78 Da        Isoelectric Point: 4.7212

>NTDB_id=218114 BW727_RS02015 WP_062471371.1 412967..414778(+) (pepF) [Jeotgalibaca dankookensis strain EX-07]
MSEIKQLPKRQELDEAMTWDLTSIFENDQAYEQALEEVSQLAEEAKTLQGSLGASSNALLTAIEKVLEVNQKLERVYVYS
HLKNDQDTANNTYQTLHDRSMAVLTKASEATSWFNPEVLAIPEETLAKYLDENEGLQAYRHLLDDLTSQREHVLSAREEA
LLAGASEIFSASSRTFSILNNADIEFPTVKDEEGHEVKLSHGLYGKLMESSDRGVRKEAYEALYKTYAGLKNTFASTLSS
HVKTHNYQAKVRNFPSARAASLANNHIPESVYDTLLEVVNDHLPLLHRYVALRKKLLNVDHLYMYDMYTPLTGEAPIQYS
IEEARATTLKSLEPLGKEYQEILQEAFGNRWIDWYENEGKRSGAYSSGAYDTNPYILMNWQNSLNQLYTLVHELGHSVHS
YHTRNNQPYAYGDYSIFLAEIASTTNENILTDYLLKNETDPNVRIYVLNHYLDGFKGTVFRQSQFAEFEHFIHQKGQEGI
PLTQEFLTDYYADLNARYYGLAVEGDDKIALEWSRIPHFYYNYYVYQYATGFAAATALSKRILDGEEGALEQYLTYLKSG
SSDYPIEVMKKAGLDMTDSAYLTDAMKVFEARLNELESLIENK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=218114 BW727_RS02015 WP_062471371.1 412967..414778(+) (pepF) [Jeotgalibaca dankookensis strain EX-07]
ATGTCTGAAATAAAACAATTACCAAAACGTCAAGAACTCGATGAGGCCATGACTTGGGATTTAACGTCTATTTTTGAAAA
CGATCAAGCTTACGAACAGGCTCTGGAAGAAGTTAGTCAGTTAGCAGAAGAAGCTAAAACATTACAAGGTAGTCTGGGTG
CGAGTAGTAACGCTTTGTTAACAGCTATTGAAAAGGTATTGGAAGTGAACCAGAAACTTGAGCGTGTCTACGTCTATTCG
CACTTAAAAAATGACCAGGACACAGCCAATAATACATACCAAACGCTACATGATCGTTCGATGGCAGTGCTGACAAAAGC
TAGCGAAGCAACTTCTTGGTTTAATCCAGAAGTTTTAGCAATTCCTGAAGAGACTTTAGCTAAATATTTAGATGAAAATG
AAGGATTACAAGCGTATCGTCATTTATTAGATGACTTAACTTCTCAACGTGAGCATGTTTTGAGTGCACGCGAAGAAGCT
TTGCTTGCAGGAGCATCAGAAATTTTTTCTGCGTCTAGCCGGACTTTTTCGATTTTAAATAATGCTGATATTGAATTTCC
AACGGTTAAAGATGAGGAAGGCCATGAAGTGAAGTTGTCGCATGGTTTATATGGCAAACTAATGGAAAGTTCAGATCGAG
GTGTTCGTAAAGAAGCGTATGAGGCCTTATATAAAACTTACGCGGGATTAAAAAATACATTCGCGTCCACTTTGTCATCT
CATGTTAAAACACATAATTACCAAGCAAAAGTACGTAATTTCCCATCTGCACGTGCTGCTTCTTTAGCGAATAACCATAT
TCCAGAAAGTGTTTATGACACTTTACTAGAAGTAGTAAATGACCATTTGCCATTGTTACATCGCTACGTTGCTTTACGTA
AAAAATTGCTCAATGTAGACCATCTCTACATGTACGATATGTATACACCTTTGACTGGTGAAGCTCCTATTCAATATTCT
ATTGAAGAGGCAAGAGCAACAACTCTAAAATCTTTAGAACCTCTAGGAAAAGAATACCAAGAAATTTTACAAGAAGCATT
TGGAAACCGTTGGATTGACTGGTATGAAAATGAAGGGAAACGTTCAGGGGCTTACTCATCTGGTGCTTATGATACTAATC
CTTACATTTTAATGAACTGGCAAAATTCTTTAAACCAGCTTTATACATTGGTTCATGAGTTAGGACATAGCGTTCATAGC
TACCATACTCGTAATAACCAACCTTATGCCTATGGGGATTATTCAATTTTCCTAGCAGAAATTGCTTCCACAACAAATGA
AAATATTTTAACTGATTATTTACTTAAAAATGAGACCGATCCAAATGTCCGTATCTATGTATTAAATCATTACTTAGATG
GATTTAAAGGGACTGTTTTCCGCCAATCACAATTCGCTGAATTCGAGCACTTTATTCATCAAAAAGGTCAAGAGGGTATT
CCATTGACACAAGAATTCCTAACGGACTATTATGCTGATTTAAATGCACGCTATTACGGTCTAGCTGTTGAAGGCGATGA
TAAAATTGCACTAGAATGGTCACGTATCCCTCATTTCTACTACAATTACTATGTTTATCAATATGCAACTGGATTCGCCG
CAGCAACTGCTTTATCTAAGCGCATCTTAGATGGTGAAGAAGGGGCATTAGAACAGTATTTAACTTACTTAAAATCTGGT
AGCAGTGACTATCCAATAGAAGTAATGAAAAAAGCAGGCCTCGATATGACAGATTCAGCCTATTTAACAGATGCCATGAA
AGTCTTTGAAGCGCGTTTAAACGAGTTGGAATCTCTAATTGAAAATAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S6IMN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.054

98.176

0.531

Multiple sequence alignment