Detailed information NTG0218094

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CXP41_RS15035
• Genome accession: NZ_CP025268
• Coordinates: 2868867..2869859 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2863867..2874859

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXP41_RS15015 (CXP41_15015)	otnK	2864643..2865809 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
CXP41_RS15020 (CXP41_15020)	ygbL	2865901..2866539 (+)	639	WP_001278994.1	aldolase	-
CXP41_RS15025 (CXP41_15025)	ygbM	2866544..2867320 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
CXP41_RS15030 (CXP41_15030)	ygbN	2867409..2868773 (+)	1365	WP_000104441.1	GntP family transporter	-
CXP41_RS15035 (CXP41_15035)	rpoS	2868867..2869859 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
CXP41_RS15040 (CXP41_15040)	nlpD	2869922..2871016 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CXP41_RS15045 (CXP41_15045)	pcm	2871201..2871827 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CXP41_RS15050 (CXP41_15050)	surE	2871821..2872582 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CXP41_RS15055 (CXP41_15055)	truD	2872563..2873612 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CXP41_RS15060 (CXP41_15060)	ispF	2873609..2874088 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CXP41_RS15065 (CXP41_15065)	ispD	2874088..2874798 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=218094 CXP41_RS15035 WP_000081588.1 2868867..2869859(-) (rpoS) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=218094 CXP41_RS15035 WP_000081588.1 2868867..2869859(-) (rpoS) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715