Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CXP41_RS14760 Genome accession   NZ_CP025268
Coordinates   2818239..2818754 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2813239..2823754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXP41_RS14735 (CXP41_14735) ygaZ 2813638..2814375 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  CXP41_RS14740 (CXP41_14740) ygaH 2814365..2814700 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CXP41_RS14745 (CXP41_14745) emrR 2814791..2815321 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CXP41_RS14750 (CXP41_14750) emrA 2815448..2816620 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CXP41_RS14755 (CXP41_14755) emrB 2816637..2818175 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CXP41_RS14760 (CXP41_14760) luxS 2818239..2818754 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CXP41_RS14765 (CXP41_14765) gshA 2818904..2820460 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CXP41_RS14770 (CXP41_14770) yqaA 2820533..2820961 (-) 429 WP_001287454.1 YqaA family protein -
  CXP41_RS14775 (CXP41_14775) yqaB 2820958..2821524 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CXP41_RS14805 (CXP41_14805) csrA 2822982..2823167 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=218092 CXP41_RS14760 WP_001130211.1 2818239..2818754(-) (luxS) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=218092 CXP41_RS14760 WP_001130211.1 2818239..2818754(-) (luxS) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731