Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CXP41_RS11120 Genome accession   NZ_CP025268
Coordinates   2086795..2088222 (+) Length   475 a.a.
NCBI ID   WP_000980589.1    Uniprot ID   P04995
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2081795..2093222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXP41_RS11085 (CXP41_11085) yeeW 2081979..2082173 (+) 195 WP_000988600.1 DUF5983 family protein -
  CXP41_RS24375 - 2082219..2082299 (+) 81 Protein_2049 hypothetical protein -
  CXP41_RS11090 (CXP41_11090) - 2082588..2082716 (-) 129 Protein_2050 transposase domain-containing protein -
  CXP41_RS11095 (CXP41_11095) - 2082788..2082970 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CXP41_RS11100 (CXP41_11100) tmaR 2083071..2083400 (-) 330 WP_000450409.1 DUF496 family protein -
  CXP41_RS11105 (CXP41_11105) yeeA 2083572..2084630 (-) 1059 WP_001200891.1 FUSC family protein -
  CXP41_RS11110 (CXP41_11110) sbmC 2084828..2085301 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  CXP41_RS11115 (CXP41_11115) dacD 2085420..2086586 (-) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CXP41_RS11120 (CXP41_11120) sbcB 2086795..2088222 (+) 1428 WP_000980589.1 exodeoxyribonuclease I Machinery gene
  CXP41_RS11125 (CXP41_11125) tsuB 2088265..2088492 (-) 228 WP_000234896.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CXP41_RS11130 (CXP41_11130) tsuA 2088506..2089564 (-) 1059 WP_000492339.1 thiosulfate utilization transporter TsuA/YeeE -
  CXP41_RS11135 (CXP41_11135) plaP 2089743..2091101 (-) 1359 WP_101348614.1 putrescine/proton symporter PlaP -
  CXP41_RS11140 (CXP41_11140) yoeI 2091091..2091153 (-) 63 WP_010723108.1 membrane protein YoeI -
  CXP41_RS11145 (CXP41_11145) yeeY 2091368..2092297 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CXP41_RS11150 (CXP41_11150) yeeZ 2092343..2093167 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4700

>NTDB_id=218081 CXP41_RS11120 WP_000980589.1 2086795..2088222(+) (sbcB) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=218081 CXP41_RS11120 WP_000980589.1 2086795..2088222(+) (sbcB) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1FXX
  PDB 2QXF
  PDB 3C94
  PDB 3C95
  PDB 3HL8
  PDB 3HP9
  PDB 4HCB
  PDB 4HCC
  PDB 4JRP
  PDB 4JRQ
  PDB 4JS4
  PDB 4JS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585

Multiple sequence alignment