Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CXP41_RS11065 Genome accession   NZ_CP025268
Coordinates   2080347..2080793 (+) Length   148 a.a.
NCBI ID   WP_000187523.1    Uniprot ID   P76362
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2075347..2085793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXP41_RS11055 (CXP41_11055) agn43 2075578..2078697 (+) 3120 WP_101348613.1 autotransporter adhesin Ag43 -
  CXP41_RS11060 (CXP41_11060) yeeR 2078818..2080350 (+) 1533 WP_001350525.1 protein YeeR -
  CXP41_RS11065 (CXP41_11065) radC 2080347..2080793 (+) 447 WP_000187523.1 RadC family protein Machinery gene
  CXP41_RS11070 (CXP41_11070) yeeT 2080856..2081077 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  CXP41_RS11075 (CXP41_11075) cbeA 2081151..2081519 (+) 369 WP_001285584.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CXP41_RS11080 (CXP41_11080) cbtA 2081608..2081982 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CXP41_RS11085 (CXP41_11085) yeeW 2081979..2082173 (+) 195 WP_000988600.1 DUF5983 family protein -
  CXP41_RS24375 - 2082219..2082299 (+) 81 Protein_2049 hypothetical protein -
  CXP41_RS11090 (CXP41_11090) - 2082588..2082716 (-) 129 Protein_2050 transposase domain-containing protein -
  CXP41_RS11095 (CXP41_11095) - 2082788..2082970 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CXP41_RS11100 (CXP41_11100) tmaR 2083071..2083400 (-) 330 WP_000450409.1 DUF496 family protein -
  CXP41_RS11105 (CXP41_11105) yeeA 2083572..2084630 (-) 1059 WP_001200891.1 FUSC family protein -
  CXP41_RS11110 (CXP41_11110) sbmC 2084828..2085301 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16556.98 Da        Isoelectric Point: 7.6151

>NTDB_id=218080 CXP41_RS11065 WP_000187523.1 2080347..2080793(+) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=218080 CXP41_RS11065 WP_000187523.1 2080347..2080793(+) (radC) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(28-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P76362

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

76.351

0.419