Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ERICV_RS13810 Genome accession   NZ_CP019717
Coordinates   2711093..2712046 (-) Length   317 a.a.
NCBI ID   WP_024094004.1    Uniprot ID   A0AAP5JX12
Organism   Paenibacillus larvae subsp. larvae strain Eric_V     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2706093..2717046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERICV_RS25350 - 2706266..2706421 (-) 156 WP_162471813.1 hypothetical protein -
  ERICV_RS25355 - 2706448..2706564 (-) 117 Protein_2792 transposase -
  ERICV_RS13785 (ERICV_02853) - 2706702..2707841 (-) 1140 WP_046655018.1 lactonase family protein -
  ERICV_RS13790 (ERICV_02854) - 2707872..2708129 (-) 258 WP_024094007.1 YqkE family protein -
  ERICV_RS13795 (ERICV_02856) - 2708353..2709306 (-) 954 WP_077995258.1 siderophore ABC transporter substrate-binding protein -
  ERICV_RS13800 (ERICV_02857) - 2709398..2710156 (-) 759 WP_023484248.1 ABC transporter ATP-binding protein -
  ERICV_RS13805 (ERICV_02858) - 2710150..2711103 (-) 954 WP_024094005.1 iron chelate uptake ABC transporter family permease subunit -
  ERICV_RS13810 (ERICV_02859) ceuB 2711093..2712046 (-) 954 WP_024094004.1 ABC transporter permease Machinery gene
  ERICV_RS13815 (ERICV_02860) fdhD 2712349..2713152 (-) 804 WP_023484251.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ERICV_RS13820 (ERICV_02861) - 2713169..2713660 (-) 492 WP_023484252.1 DUF1641 domain-containing protein -
  ERICV_RS13825 (ERICV_02862) fdhF 2713663..2716611 (-) 2949 WP_172423384.1 formate dehydrogenase subunit alpha -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35098.42 Da        Isoelectric Point: 10.2577

>NTDB_id=218033 ERICV_RS13810 WP_024094004.1 2711093..2712046(-) (ceuB) [Paenibacillus larvae subsp. larvae strain Eric_V]
MKLRYLFIALVILSFASVFIGVKEVSPMDMLHLGEEQVQVILISRIPRLVSIIIAGVSMSISGLIMQQISRNKFVSPTTA
GTMDFARLGILVSIMLFTTASPLVKMLVAFIFALLGTLLFMKILKRIRFKDTIFIPLVGIMFGNVVSSITTFFAYKYDLI
QNINAWLQGDFSMIIKGRYELLYLSIPIVIIAFLYANKFTVAGMGEDFSKNLGVNYNRVVNVGLVIVALVSAVVILTVGT
IPFLGLIIPNIVSIYRGDNLRNSLPHTALLGAVFVLFCDILGRIIIFPYEVSISVTVGVIGSIIFLYLLFRRNAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=218033 ERICV_RS13810 WP_024094004.1 2711093..2712046(-) (ceuB) [Paenibacillus larvae subsp. larvae strain Eric_V]
ATGAAACTACGATACCTTTTCATAGCGCTTGTTATCTTATCTTTCGCCTCCGTTTTCATCGGGGTAAAAGAAGTTTCCCC
GATGGATATGCTTCATCTGGGGGAAGAACAGGTCCAGGTTATTCTTATTAGCCGGATTCCCCGTCTGGTCAGTATTATCA
TCGCGGGAGTCAGTATGAGCATTAGCGGTCTTATCATGCAGCAGATCAGCCGCAACAAATTTGTCTCGCCGACTACGGCC
GGAACGATGGACTTCGCCAGGCTGGGTATTCTCGTTTCGATTATGCTGTTCACCACGGCCAGTCCACTGGTGAAGATGCT
TGTAGCTTTCATCTTTGCTTTGCTGGGGACGTTATTGTTCATGAAAATCCTTAAACGGATCAGGTTCAAGGATACGATCT
TTATCCCGCTTGTCGGCATCATGTTCGGGAATGTTGTAAGCTCGATCACAACTTTCTTTGCTTACAAATATGACTTGATT
CAGAATATCAATGCATGGCTTCAGGGTGATTTCTCAATGATCATTAAAGGGAGGTACGAGCTTTTATATCTTAGTATTCC
TATTGTGATCATTGCCTTTCTCTATGCCAACAAGTTTACTGTGGCGGGAATGGGAGAAGATTTCTCCAAAAACTTGGGTG
TAAACTATAACCGGGTTGTCAATGTTGGGCTCGTGATCGTAGCACTGGTCTCCGCAGTGGTAATCCTGACTGTAGGTACT
ATTCCGTTTCTTGGCTTGATTATTCCGAATATCGTTTCGATCTACAGGGGAGATAATCTGAGAAACAGTCTTCCCCACAC
AGCATTGCTTGGAGCGGTGTTCGTTCTTTTCTGTGACATTCTAGGCCGGATTATCATTTTCCCGTATGAGGTATCTATAA
GTGTTACGGTCGGAGTGATCGGAAGCATCATCTTCCTTTACTTACTATTTAGGAGAAACGCTTATGCATCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.582

99.685

0.514

Multiple sequence alignment