Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BH100B_RS16925 Genome accession   NZ_CP025251
Coordinates   3336387..3336863 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain BH100 substr. MG2017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3331387..3341863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BH100B_RS16895 (BH100B_03309) - 3331533..3334049 (+) 2517 WP_023152150.1 hypothetical protein -
  BH100B_RS16900 (BH100B_03310) - 3334125..3334580 (+) 456 WP_000581504.1 IrmA family protein -
  BH100B_RS16905 (BH100B_03311) - 3334659..3334892 (+) 234 WP_001119729.1 DUF905 family protein -
  BH100B_RS16915 (BH100B_03312) - 3334992..3335810 (+) 819 WP_032250973.1 DUF932 domain-containing protein -
  BH100B_RS16920 (BH100B_03313) - 3335892..3336371 (+) 480 WP_023568406.1 antirestriction protein -
  BH100B_RS16925 (BH100B_03314) radC 3336387..3336863 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  BH100B_RS16930 (BH100B_03315) - 3336926..3337147 (+) 222 WP_000692305.1 DUF987 domain-containing protein -
  BH100B_RS16935 (BH100B_03317) cbeA 3337310..3337678 (+) 369 WP_065377585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BH100B_RS16940 (BH100B_03318) cbtA 3337767..3338144 (+) 378 WP_023152077.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BH100B_RS16945 (BH100B_03319) - 3338141..3338629 (+) 489 WP_065377586.1 DUF5983 family protein -
  BH100B_RS16950 (BH100B_03320) - 3338641..3338838 (+) 198 WP_000839281.1 DUF957 domain-containing protein -
  BH100B_RS16955 (BH100B_03321) - 3338935..3339444 (+) 510 WP_050582268.1 DUF4942 domain-containing protein -
  BH100B_RS16960 (BH100B_03322) - 3339847..3340017 (+) 171 Protein_3132 IS110 family transposase -
  BH100B_RS16965 (BH100B_03324) - 3340816..3341799 (+) 984 WP_001331698.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=217814 BH100B_RS16925 WP_001186773.1 3336387..3336863(+) (radC) [Escherichia coli strain BH100 substr. MG2017]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=217814 BH100B_RS16925 WP_001186773.1 3336387..3336863(+) (radC) [Escherichia coli strain BH100 substr. MG2017]
ATGCAACAACTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392