Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CSPB_RS04940 Genome accession   NZ_CP019685
Coordinates   1006709..1007089 (+) Length   126 a.a.
NCBI ID   WP_089193396.1    Uniprot ID   -
Organism   Campylobacter sputorum subsp. bovis strain RM8705     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1001709..1012089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSPB_RS04920 (CSPB_0984) - 1002575..1003672 (+) 1098 WP_089193392.1 CinA family protein -
  CSPB_RS04925 (CSPB_0985) ilvC 1003738..1004760 (+) 1023 WP_089193393.1 ketol-acid reductoisomerase -
  CSPB_RS04930 (CSPB_0986) - 1004801..1005958 (+) 1158 WP_089193394.1 divergent polysaccharide deacetylase family protein -
  CSPB_RS04935 (CSPB_0987) dprA 1005942..1006712 (+) 771 WP_089193395.1 DNA-processing protein DprA -
  CSPB_RS04940 (CSPB_0988) dprB 1006709..1007089 (+) 381 WP_089193396.1 Holliday junction resolvase RuvX Machinery gene
  CSPB_RS08830 - 1007243..1007335 (+) 93 Protein_989 hypothetical protein -
  CSPB_RS09105 - 1007604..1008011 (+) 408 Protein_990 hypothetical protein -
  CSPB_RS09110 - 1009032..1009433 (+) 402 Protein_991 methyl-accepting chemotaxis protein -
  CSPB_RS04950 (CSPB_0990) - 1009502..1010038 (-) 537 WP_089193398.1 HIT family protein -
  CSPB_RS04955 (CSPB_0991) trpC 1010041..1010823 (-) 783 WP_089193399.1 indole-3-glycerol phosphate synthase TrpC -
  CSPB_RS04960 (CSPB_0992) - 1010810..1012072 (-) 1263 WP_089193400.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14048.45 Da        Isoelectric Point: 10.2682

>NTDB_id=217811 CSPB_RS04940 WP_089193396.1 1006709..1007089(+) (dprB) [Campylobacter sputorum subsp. bovis strain RM8705]
MIVAIDVGLKRIGVAISYENGVVLPLNAIIRKNRNQASKEISQLLQDYKAKKLVVGIPLGGSSEDEMTRRIKHFVNLINF
SGEIIFIDESFSSKEASDFAVINHKKKDGKLDSLSAMIILKRYIKS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=217811 CSPB_RS04940 WP_089193396.1 1006709..1007089(+) (dprB) [Campylobacter sputorum subsp. bovis strain RM8705]
ATGATAGTGGCTATAGATGTTGGTTTAAAAAGAATAGGAGTTGCCATATCTTATGAAAATGGAGTAGTTTTGCCGCTAAA
TGCAATTATACGCAAAAATCGCAATCAAGCTTCAAAAGAAATAAGTCAGTTACTACAAGATTATAAAGCAAAAAAACTTG
TTGTTGGTATCCCACTTGGCGGAAGTAGTGAAGATGAGATGACTAGACGCATAAAACACTTTGTAAATTTAATAAATTTT
AGTGGAGAGATAATTTTTATAGATGAGAGTTTTTCAAGCAAAGAGGCTAGCGATTTTGCAGTAATAAACCACAAGAAAAA
AGATGGAAAACTAGATAGTTTGAGTGCAATGATAATACTTAAAAGATATATTAAAAGTTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

51.128

100

0.54

Multiple sequence alignment