Detailed information NTG0217810

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BH100B_RS15150
• Genome accession: NZ_CP025251
• Coordinates: 2974993..2975985 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BH100 substr. MG2017
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2969993..2980985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BH100B_RS15130 (BH100B_02953)	ygbM	2970624..2971400 (+)	777	WP_001136928.1	HPr family phosphocarrier protein	-
BH100B_RS15135 (BH100B_02954)	ygbN	2971489..2972853 (+)	1365	WP_000104433.1	GntP family transporter	-
BH100B_RS15140 (BH100B_02955)	-	2972996..2974039 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
BH100B_RS15145 (BH100B_02956)	-	2974264..2974815 (+)	552	WP_001179442.1	flavodoxin family protein	-
BH100B_RS15150 (BH100B_02957)	rpoS	2974993..2975985 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BH100B_RS15155 (BH100B_02958)	nlpD	2976048..2977142 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
BH100B_RS15160 (BH100B_02959)	pcm	2977327..2977953 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
BH100B_RS15165 (BH100B_02960)	surE	2977947..2978708 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BH100B_RS15170 (BH100B_02961)	truD	2978689..2979738 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
BH100B_RS15175 (BH100B_02962)	ispF	2979735..2980214 (-)	480	WP_001219252.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BH100B_RS15180 (BH100B_02963)	ispD	2980214..2980924 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=217810 BH100B_RS15150 WP_000081550.1 2974993..2975985(-) (rpoS) [Escherichia coli strain BH100 substr. MG2017]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=217810 BH100B_RS15150 WP_000081550.1 2974993..2975985(-) (rpoS) [Escherichia coli strain BH100 substr. MG2017]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGTTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715