Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BH100B_RS14795 Genome accession   NZ_CP025251
Coordinates   2904753..2905268 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain BH100 substr. MG2017     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2899753..2910268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BH100B_RS14770 (BH100B_02880) ygaZ 2900152..2900889 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  BH100B_RS14775 (BH100B_02881) ygaH 2900879..2901214 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  BH100B_RS14780 (BH100B_02882) emrR 2901305..2901835 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BH100B_RS14785 (BH100B_02884) emrA 2901962..2903134 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BH100B_RS14790 (BH100B_02885) emrB 2903151..2904689 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  BH100B_RS14795 (BH100B_02886) luxS 2904753..2905268 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  BH100B_RS14800 (BH100B_02887) gshA 2905418..2906974 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BH100B_RS14805 (BH100B_02888) yqaA 2907047..2907475 (-) 429 WP_001287454.1 YqaA family protein -
  BH100B_RS14810 (BH100B_02889) yqaB 2907472..2908038 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BH100B_RS14840 (BH100B_02890) csrA 2909091..2909276 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=217807 BH100B_RS14795 WP_001130208.1 2904753..2905268(-) (luxS) [Escherichia coli strain BH100 substr. MG2017]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=217807 BH100B_RS14795 WP_001130208.1 2904753..2905268(-) (luxS) [Escherichia coli strain BH100 substr. MG2017]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737