Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BH100B_RS11245 Genome accession   NZ_CP025251
Coordinates   2181396..2181872 (+) Length   158 a.a.
NCBI ID   WP_001541535.1    Uniprot ID   -
Organism   Escherichia coli strain BH100 substr. MG2017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2176396..2186872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BH100B_RS11215 (BH100B_02175) - 2177293..2178363 (+) 1071 WP_000102631.1 patatin-like phospholipase family protein -
  BH100B_RS11220 (BH100B_02176) - 2178499..2179176 (+) 678 WP_001362823.1 hypothetical protein -
  BH100B_RS11225 (BH100B_02177) - 2179192..2179602 (+) 411 WP_000846704.1 hypothetical protein -
  BH100B_RS11235 (BH100B_02178) - 2179823..2180644 (+) 822 WP_001234571.1 DUF932 domain-containing protein -
  BH100B_RS11240 (BH100B_02179) - 2180907..2181380 (+) 474 WP_000855074.1 antirestriction protein -
  BH100B_RS11245 (BH100B_02180) radC 2181396..2181872 (+) 477 WP_001541535.1 RadC family protein Machinery gene
  BH100B_RS11250 (BH100B_02181) yeeT 2181941..2182162 (+) 222 WP_000692346.1 DUF987 domain-containing protein -
  BH100B_RS11255 (BH100B_02182) cbeA 2182236..2182604 (+) 369 WP_024174331.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BH100B_RS11260 (BH100B_02183) cbtA 2182693..2183067 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BH100B_RS11265 (BH100B_02184) yeeW 2183064..2183258 (+) 195 WP_000988601.1 DUF5983 family protein -
  BH100B_RS27400 (BH100B_02185) - 2183304..2183384 (+) 81 Protein_2074 hypothetical protein -
  BH100B_RS27995 (BH100B_02186) - 2183873..2184055 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  BH100B_RS11280 (BH100B_02187) tmaR 2184156..2184485 (-) 330 WP_000450409.1 DUF496 family protein -
  BH100B_RS11285 (BH100B_02189) yeeA 2184657..2185715 (-) 1059 WP_001200890.1 FUSC family protein -
  BH100B_RS11290 (BH100B_02190) sbmC 2185913..2186386 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17607.27 Da        Isoelectric Point: 6.9180

>NTDB_id=217796 BH100B_RS11245 WP_001541535.1 2181396..2181872(+) (radC) [Escherichia coli strain BH100 substr. MG2017]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKCALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=217796 BH100B_RS11245 WP_001541535.1 2181396..2181872(+) (radC) [Escherichia coli strain BH100 substr. MG2017]
ATGCAACAGATTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTATATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAATGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment