Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CSF_RS04750 Genome accession   NZ_CP019683
Coordinates   949722..951065 (+) Length   447 a.a.
NCBI ID   WP_089182545.1    Uniprot ID   -
Organism   Campylobacter sputorum bv. faecalis CCUG 20703     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 944722..956065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSF_RS04735 (CSF_0948) brnQ 945077..946390 (-) 1314 WP_235611178.1 branched-chain amino acid transport system II carrier protein -
  CSF_RS09520 - 947010..947273 (+) 264 Protein_938 methyl-accepting chemotaxis protein -
  CSF_RS09525 - 947334..947687 (+) 354 WP_235611234.1 CZB domain-containing protein -
  CSF_RS09530 - 947734..948240 (-) 507 Protein_940 methyl-accepting chemotaxis protein -
  CSF_RS09535 - 948592..949623 (-) 1032 Protein_941 cache domain-containing protein -
  CSF_RS04750 (CSF_0951) radA 949722..951065 (+) 1344 WP_089182545.1 DNA repair protein RadA Machinery gene
  CSF_RS04755 (CSF_0952) mnmG 951117..952988 (+) 1872 WP_089188216.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  CSF_RS04760 (CSF_0953) - 952991..953203 (+) 213 WP_089182547.1 hypothetical protein -
  CSF_RS04765 (CSF_0954) - 953200..953688 (-) 489 WP_089188217.1 DUF4149 domain-containing protein -
  CSF_RS04770 (CSF_0955) - 953685..954167 (-) 483 WP_089188218.1 GNAT family N-acetyltransferase -
  CSF_RS04775 (CSF_0956) prmC 954160..954957 (-) 798 WP_089188219.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49408.24 Da        Isoelectric Point: 7.8949

>NTDB_id=217782 CSF_RS04750 WP_089182545.1 949722..951065(+) (radA) [Campylobacter sputorum bv. faecalis CCUG 20703]
MAKTKTTIFECEHCGNQQNRWLGKCPECGAFNSFVELKADQIKALKEISKIHISTSKAKPISEVEIEKISRLSTEDEELD
LVLGGGVVEGSLVLIGGSPGIGKSTLLLKIASNLSKNDRNVLYISGEESESQIKMRADRLNAINKNLFLLTEICLENIKS
ELANKEYKIIVVDSIQTLYSENISSAPGSVSQVREITFELMRIAKEKNICIFIIGHITKEGSIAGPRVLEHMVDVVLYFE
GDASKELRILRGFKNRFGSTSEVGIFEMSQNGLIPAKNIASKFFTRGKAISGSAVTVIMEGSRPLVVEIQALVCESSYPK
RSSTGYDRNRLDMILALLERKIELPLGHYDVFINVIGGVKINETAADLAVVAAIVSSFKNRPISKETIFIGEVSLNGEIR
DVYNLDIRLKEASIQKFKNAIVPLKTTSNSTIKTFIAKEINQVLDWM

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=217782 CSF_RS04750 WP_089182545.1 949722..951065(+) (radA) [Campylobacter sputorum bv. faecalis CCUG 20703]
ATGGCAAAAACAAAAACAACGATATTTGAGTGTGAGCATTGTGGCAATCAACAAAACAGATGGCTTGGAAAATGCCCAGA
ATGTGGTGCTTTTAATAGTTTTGTAGAGTTAAAAGCAGATCAAATAAAAGCCTTAAAGGAAATTTCTAAAATTCACATTA
GCACTTCAAAAGCAAAACCTATCAGTGAAGTTGAGATAGAAAAAATTTCAAGACTTAGCACAGAAGATGAAGAGCTTGAT
TTGGTTTTAGGTGGCGGTGTTGTAGAAGGTTCTTTGGTGCTTATTGGCGGAAGTCCTGGGATTGGAAAATCAACCCTACT
TTTAAAAATAGCTTCAAATTTAAGCAAAAATGATAGAAATGTTTTATATATAAGCGGCGAAGAAAGCGAAAGTCAGATTA
AAATGCGAGCAGATAGGCTTAATGCAATAAATAAAAATCTATTTTTATTAACAGAAATTTGCCTTGAAAATATCAAATCT
GAACTAGCAAATAAAGAGTATAAAATTATCGTAGTTGATAGCATACAAACACTTTATAGTGAAAATATAAGCTCAGCTCC
TGGAAGCGTTTCACAAGTAAGGGAGATTACATTTGAACTTATGCGTATAGCAAAAGAAAAAAATATATGCATTTTTATAA
TCGGACATATAACAAAAGAAGGTAGCATTGCGGGTCCAAGGGTGCTAGAACATATGGTTGATGTAGTTTTGTATTTTGAA
GGAGATGCGAGTAAAGAACTTAGAATTTTAAGAGGATTTAAAAATAGATTTGGGTCAACTAGCGAAGTTGGAATTTTTGA
AATGAGTCAAAATGGTTTAATACCTGCAAAAAACATCGCAAGTAAATTTTTTACAAGAGGTAAAGCAATAAGCGGAAGTG
CAGTAACCGTCATAATGGAGGGCTCTCGCCCATTAGTCGTAGAAATTCAAGCTTTGGTTTGCGAAAGTTCATACCCAAAA
AGAAGCTCAACAGGATATGATAGAAACAGACTTGATATGATACTAGCTTTGCTTGAGAGAAAAATAGAGCTTCCTTTGGG
GCATTATGATGTTTTTATAAATGTTATAGGCGGAGTTAAGATAAATGAAACCGCAGCAGATCTTGCCGTGGTTGCTGCGA
TAGTTAGTAGCTTTAAAAACAGACCAATAAGTAAAGAAACTATTTTTATAGGAGAAGTTAGTTTAAATGGGGAAATAAGA
GATGTTTATAACTTAGATATAAGGCTAAAAGAAGCAAGTATACAAAAATTTAAAAATGCTATAGTCCCACTAAAAACAAC
ATCTAATAGCACAATAAAAACTTTCATAGCAAAAGAAATAAATCAAGTTTTAGACTGGATGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(350-424)

AAA domain (AAA_25)

(67-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.168

95.749

0.49
  radA Streptococcus pneumoniae Rx1

47.085

99.776

0.47
  radA Streptococcus pneumoniae D39

47.085

99.776

0.47
  radA Streptococcus pneumoniae R6

47.085

99.776

0.47
  radA Streptococcus pneumoniae TIGR4

47.085

99.776

0.47
  radA Streptococcus mitis SK321

47.897

95.749

0.459
  radA Streptococcus mitis NCTC 12261

47.897

95.749

0.459

Multiple sequence alignment