Detailed information NTG0021776

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LPG_RS06430
• Genome accession: NC_002942
• Coordinates: 1412016..1413041 (+)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila subsp. pneumophila str. Philadelphia
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1407016..1418041

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPG_RS06400 (lpg1278)	-	1407450..1407767 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
LPG_RS06405 (lpg1279)	-	1407804..1408175 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
LPG_RS06410 (lpg1280)	-	1408223..1409947 (-)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
LPG_RS06415 (lpg1281)	-	1410027..1410410 (+)	384	WP_010947012.1	hypothetical protein	-
LPG_RS06420 (lpg1282)	surE	1410413..1411168 (+)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
LPG_RS06425 (lpg1283)	-	1411187..1411930 (+)	744	WP_010947014.1	peptidoglycan DD-metalloendopeptidase family protein	-
LPG_RS06430 (lpg1284)	rpoS	1412016..1413041 (+)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
LPG_RS06435 (lpg1285)	hmgA	1413144..1414394 (-)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
LPG_RS06440 (lpg1286)	-	1414540..1415283 (+)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
LPG_RS06445 (lpg1287)	ruvC	1415283..1415807 (+)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
LPG_RS06450 (lpg1288)	ruvA	1415804..1416403 (+)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
LPG_RS06455 (lpg1289)	-	1416453..1416773 (+)	321	WP_010947020.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=21776 LPG_RS06430 WP_015444568.1 1412016..1413041(+) (rpoS) [Legionella pneumophila subsp. pneumophila str. Philadelphia]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=21776 LPG_RS06430 WP_015444568.1 1412016..1413041(+) (rpoS) [Legionella pneumophila subsp. pneumophila str. Philadelphia]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548