Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   CXG95_RS19930 Genome accession   NZ_CP025226
Coordinates   3819905..3820135 (-) Length   76 a.a.
NCBI ID   WP_003178210.1    Uniprot ID   A0A6I1MI94
Organism   Bacillus licheniformis strain PB3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3814905..3825135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXG95_RS19920 (CXG95_19915) spoVT 3815633..3816169 (-) 537 WP_003178213.1 stage V sporulation protein T -
  CXG95_RS19925 (CXG95_19920) mfd 3816307..3819840 (-) 3534 WP_003178212.1 transcription-repair coupling factor -
  CXG95_RS19930 (CXG95_19925) subA/fin 3819905..3820135 (-) 231 WP_003178210.1 anti-sigma-F factor Fin family protein Machinery gene
  CXG95_RS19935 (CXG95_19930) pth 3820192..3820758 (-) 567 WP_003178208.1 aminoacyl-tRNA hydrolase -
  CXG95_RS19940 (CXG95_19935) - 3820875..3821501 (-) 627 WP_003178205.1 50S ribosomal protein L25/general stress protein Ctc -
  CXG95_RS19945 (CXG95_19940) - 3821582..3822532 (-) 951 WP_003178203.1 ribose-phosphate diphosphokinase -
  CXG95_RS19950 (CXG95_19945) glmU 3822553..3823923 (-) 1371 WP_003178200.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  CXG95_RS19955 (CXG95_19950) spoVG 3824228..3824521 (-) 294 WP_003178198.1 septation regulator SpoVG -
  CXG95_RS19960 (CXG95_19955) ridA 3824701..3825078 (-) 378 WP_003178196.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8950.85 Da        Isoelectric Point: 5.3733

>NTDB_id=217758 CXG95_RS19930 WP_003178210.1 3819905..3820135(-) (subA/fin) [Bacillus licheniformis strain PB3]
MALHYYCRHCGVKVGSLDHSYVNSEQLGFNHLTNDERNDMISYMDNGDLHVKTICEDCQEALERNPDYHQYHSFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=217758 CXG95_RS19930 WP_003178210.1 3819905..3820135(-) (subA/fin) [Bacillus licheniformis strain PB3]
ATGGCTTTACATTATTATTGCCGGCATTGCGGCGTTAAAGTCGGAAGTCTTGACCATTCTTATGTAAACAGTGAACAGTT
AGGCTTTAACCACTTAACAAATGATGAAAGAAACGATATGATTTCTTATATGGATAATGGGGATTTACACGTGAAGACGA
TATGTGAAGATTGTCAAGAAGCGCTTGAGCGAAACCCGGATTATCACCAATATCATTCATTTATTCAATAG

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MI94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

77.632

100

0.776