Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B0663_RS05070 Genome accession   NZ_CP019681
Coordinates   1040572..1041177 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Enteritidis strain SE86     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1035572..1046177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0663_RS05050 (B0663_05010) - 1035967..1037727 (-) 1761 WP_000156448.1 AAA family ATPase -
  B0663_RS05055 (B0663_05015) matP 1037913..1038365 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  B0663_RS05060 (B0663_05020) ompA 1038437..1039489 (-) 1053 WP_001674965.1 porin OmpA -
  B0663_RS05065 (B0663_05025) sulA 1039846..1040355 (-) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  B0663_RS05070 (B0663_05030) sxy/tfoX 1040572..1041177 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  B0663_RS05075 (B0663_05035) yccS 1041164..1043317 (-) 2154 WP_000950876.1 YccS family putative transporter -
  B0663_RS05080 (B0663_05040) - 1043336..1043782 (-) 447 WP_001261222.1 YccF domain-containing protein -
  B0663_RS05085 (B0663_05045) helD 1043906..1045960 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=217743 B0663_RS05070 WP_001202375.1 1040572..1041177(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Enteritidis strain SE86]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=217743 B0663_RS05070 WP_001202375.1 1040572..1041177(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Enteritidis strain SE86]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment