Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   CXG95_RS10575 Genome accession   NZ_CP025226
Coordinates   2002111..2002542 (-) Length   143 a.a.
NCBI ID   WP_003181967.1    Uniprot ID   Q65JE4
Organism   Bacillus licheniformis strain PB3     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1997111..2007542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXG95_RS10565 (CXG95_10580) hexA 1998600..2001209 (-) 2610 WP_011197985.1 DNA mismatch repair protein MutS Machinery gene
  CXG95_RS10570 (CXG95_10585) cotE 2001320..2001868 (-) 549 WP_003181968.1 outer spore coat protein CotE -
  CXG95_RS10575 (CXG95_10590) ymcA 2002111..2002542 (-) 432 WP_003181967.1 RicAFT regulatory complex protein RicA family protein Regulator
  CXG95_RS10580 (CXG95_10595) miaB 2002544..2004073 (-) 1530 WP_003181965.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  CXG95_RS10585 (CXG95_10600) - 2004217..2005392 (-) 1176 WP_009328481.1 glycine C-acetyltransferase -
  CXG95_RS10590 (CXG95_10605) tdh 2005408..2006451 (-) 1044 WP_111304960.1 L-threonine 3-dehydrogenase -
  CXG95_RS10595 (CXG95_10610) - 2006576..2007496 (-) 921 WP_021837473.1 dipeptidase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16031.27 Da        Isoelectric Point: 5.0583

>NTDB_id=217698 CXG95_RS10575 WP_003181967.1 2002111..2002542(-) (ymcA) [Bacillus licheniformis strain PB3]
MTLYTKKEIVAKARELAKMIAETEEVDFFKKAEAQINENAKITGIINQIKALQKQAVNFKHYEKHEALKQTEAKIDALQE
ELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKNSSPSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=217698 CXG95_RS10575 WP_003181967.1 2002111..2002542(-) (ymcA) [Bacillus licheniformis strain PB3]
GTGACGCTTTATACGAAAAAAGAGATTGTTGCAAAAGCGCGGGAGCTCGCAAAAATGATTGCAGAAACGGAAGAAGTCGA
CTTTTTCAAAAAAGCGGAGGCACAGATTAATGAGAATGCCAAAATAACGGGCATAATCAACCAAATCAAAGCCCTGCAAA
AGCAAGCCGTCAACTTTAAACATTACGAAAAGCACGAAGCGCTTAAACAAACGGAAGCAAAGATTGACGCGCTTCAGGAA
GAGCTTGACGAGATTCCGATCATTCAAGAGTTCAGAGACTCCCAAATGGAAGTCAACGACCTTCTTCAGCTTGTCGCGCA
TACAATATCAAACCAAGTGACAAACGAGATCATCACATCGACCGGGGGAGACCTGCTGAAAGGCGAGACCGGTTCAAAAG
TGAAAAATTCATCACCGAGCTGTTCTCTATAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65JE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

86.713

100

0.867