Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ERICIV_RS20810 Genome accession   NZ_CP019659
Coordinates   4023500..4024867 (-) Length   455 a.a.
NCBI ID   WP_042119371.1    Uniprot ID   A0A1U9YN08
Organism   Paenibacillus larvae subsp. larvae strain Eric_IV     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4018500..4029867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERICIV_RS20780 (ERICIV_04280) ispF 4018630..4019109 (-) 480 WP_023482192.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ERICIV_RS20785 (ERICIV_04281) ispD 4019110..4019808 (-) 699 WP_023482193.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ERICIV_RS20790 (ERICIV_04282) - 4019862..4020932 (-) 1071 WP_230460822.1 PIN/TRAM domain-containing protein -
  ERICIV_RS20795 (ERICIV_04283) - 4021072..4021467 (+) 396 WP_023482195.1 hypothetical protein -
  ERICIV_RS20800 (ERICIV_04284) pssA 4021573..4022316 (-) 744 WP_023482196.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  ERICIV_RS20805 (ERICIV_04285) disA 4022388..4023467 (-) 1080 WP_023482197.1 DNA integrity scanning diadenylate cyclase DisA -
  ERICIV_RS20810 (ERICIV_04286) radA 4023500..4024867 (-) 1368 WP_042119371.1 DNA repair protein RadA Machinery gene
  ERICIV_RS20815 (ERICIV_04287) clpC 4025043..4027493 (-) 2451 WP_023482199.1 ATP-dependent protease ATP-binding subunit ClpC -
  ERICIV_RS20820 (ERICIV_04288) - 4027550..4028620 (-) 1071 WP_042119372.1 protein arginine kinase -
  ERICIV_RS20825 (ERICIV_04289) - 4028673..4029197 (-) 525 WP_023482201.1 UvrB/UvrC motif-containing protein -
  ERICIV_RS20830 (ERICIV_04290) - 4029211..4029672 (-) 462 WP_036655527.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49896.47 Da        Isoelectric Point: 6.8273

>NTDB_id=217683 ERICIV_RS20810 WP_042119371.1 4023500..4024867(-) (radA) [Paenibacillus larvae subsp. larvae strain Eric_IV]
MGKQKTKFYCQDCGYESIKWLGKCPGCGAWNTFVEEIQKIMKTQGMDSSLFQTKEKPQPIINIESSPEPRVITENRELNR
VLGGGFVPGSLILVGGDPGIGKSTLLLQTSYSLAKSGQKVLYISGEESVKQTRLRADRLNAMSRLLYVLCETNLESIEEA
IREVEPDFMVIDSIQTVYHPSVTSAPGTVSQVRECTGHFMRIAKTKGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHSYRVLRAVKNRFGSTNEIGIFEMQETGLTEVHNPSELFLSERPLGVAGSTVVASMEGTRPVLVEIQALVSMTNFPS
PRRMATGIDYNRLSLIIAVLEKRVGLFLQNQDAYLNVAGGVRLDEPAVDLAAAISIASSFKEQATQPFDVVFGEVGLTGE
VRGVSRVEQRVNEAQKLGFKRVIMPEKSLKGFTPPRGIEVIGVNTVDEALAITLG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=217683 ERICIV_RS20810 WP_042119371.1 4023500..4024867(-) (radA) [Paenibacillus larvae subsp. larvae strain Eric_IV]
ATGGGTAAACAGAAGACTAAGTTTTATTGTCAGGATTGTGGGTACGAATCGATTAAATGGCTGGGAAAATGTCCGGGCTG
CGGAGCTTGGAATACATTTGTCGAGGAAATACAAAAAATTATGAAGACACAAGGAATGGATTCATCCTTGTTTCAAACGA
AAGAAAAACCACAACCAATCATAAATATAGAAAGCAGCCCGGAGCCTAGGGTAATTACAGAGAACAGAGAACTCAACAGG
GTATTGGGGGGAGGGTTCGTTCCCGGGTCCCTTATATTAGTCGGAGGGGATCCAGGAATAGGAAAGTCCACTCTTCTTCT
TCAAACTTCTTATTCTTTAGCAAAATCCGGCCAGAAGGTTTTATATATATCCGGAGAGGAATCGGTGAAACAGACAAGGC
TGCGGGCGGACCGTTTAAATGCTATGTCACGATTGCTTTATGTCCTCTGCGAGACGAATCTGGAATCCATTGAGGAGGCA
ATTCGGGAAGTAGAACCTGATTTTATGGTTATCGATTCCATTCAGACGGTATACCATCCTTCTGTTACTTCTGCTCCAGG
TACTGTATCCCAGGTCAGGGAATGTACAGGGCATTTCATGAGAATTGCCAAAACGAAAGGAATTGCTACTGTACTGGTAG
GCCATGTCACCAAAGAAGGGGCCATTGCCGGACCAAGAATGCTGGAGCATATGGTTGATTGTGTCCTTTATTTCGAGGGA
GAGCGACATCATTCTTACCGCGTTCTTCGGGCTGTCAAAAACCGTTTTGGCTCAACTAATGAAATCGGTATTTTTGAAAT
GCAGGAAACCGGTTTGACTGAAGTTCATAATCCTTCCGAGCTGTTTTTGTCAGAGAGGCCTCTGGGGGTTGCAGGTTCCA
CGGTAGTCGCCAGTATGGAGGGGACACGACCCGTATTGGTTGAGATTCAGGCGTTGGTCTCAATGACCAACTTTCCTTCT
CCAAGAAGGATGGCTACAGGTATAGATTATAATCGCTTATCTTTAATCATTGCCGTTTTGGAGAAAAGAGTAGGATTATT
TTTACAAAATCAGGATGCTTATTTGAATGTCGCAGGCGGAGTTAGACTCGATGAACCTGCGGTAGATCTGGCCGCGGCTA
TCAGTATTGCATCCAGCTTCAAAGAACAAGCTACCCAGCCTTTTGATGTTGTTTTTGGTGAGGTAGGGCTTACCGGCGAA
GTAAGGGGAGTCTCCCGGGTAGAGCAGCGGGTCAACGAAGCCCAGAAGCTTGGATTTAAACGTGTCATTATGCCCGAAAA
AAGTCTTAAAGGATTCACACCACCACGCGGGATTGAAGTGATAGGGGTTAACACGGTAGATGAAGCATTAGCCATTACAC
TAGGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-220)

Subunit ChlI of Mg-chelatase (ChlI)

(351-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U9YN08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.709

100

0.69
  radA Streptococcus mitis NCTC 12261

58.667

98.901

0.58
  radA Streptococcus mitis SK321

58.667

98.901

0.58
  radA Streptococcus pneumoniae Rx1

58.444

98.901

0.578
  radA Streptococcus pneumoniae D39

58.444

98.901

0.578
  radA Streptococcus pneumoniae R6

58.444

98.901

0.578
  radA Streptococcus pneumoniae TIGR4

58.444

98.901

0.578

Multiple sequence alignment