Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   CXG95_RS07035 Genome accession   NZ_CP025226
Coordinates   1346443..1346814 (+) Length   123 a.a.
NCBI ID   WP_003183461.1    Uniprot ID   -
Organism   Bacillus licheniformis strain PB3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1341443..1351814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXG95_RS06995 (CXG95_07000) - 1341759..1342136 (+) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  CXG95_RS07005 (CXG95_07010) - 1342378..1343217 (+) 840 WP_003183480.1 STAS domain-containing protein -
  CXG95_RS07010 (CXG95_07015) comGA 1343374..1344312 (+) 939 WP_061565980.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  CXG95_RS07015 (CXG95_07020) comGB 1344302..1345336 (+) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  CXG95_RS07020 (CXG95_07025) comGC 1345350..1345643 (+) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  CXG95_RS07025 (CXG95_07030) comGD 1345649..1346086 (+) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD Machinery gene
  CXG95_RS07030 (CXG95_07035) comGE 1346070..1346417 (+) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  CXG95_RS07035 (CXG95_07040) comGF 1346443..1346814 (+) 372 WP_003183461.1 competence type IV pilus minor pilin ComGF Machinery gene
  CXG95_RS07040 (CXG95_07045) comGG 1346827..1347192 (+) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  CXG95_RS07045 (CXG95_07050) - 1347281..1347463 (+) 183 WP_003183456.1 YqzE family protein -
  CXG95_RS07050 (CXG95_07055) - 1347487..1347774 (-) 288 WP_223307118.1 YqzG/YhdC family protein -
  CXG95_RS07055 (CXG95_07060) tapA 1348084..1348812 (+) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  CXG95_RS07060 (CXG95_07065) - 1348809..1349393 (+) 585 WP_003183449.1 signal peptidase I -
  CXG95_RS07065 (CXG95_07070) - 1349467..1350261 (+) 795 WP_003183447.1 TasA family protein -
  CXG95_RS07070 (CXG95_07075) sinR 1350366..1350701 (-) 336 WP_025804940.1 helix-turn-helix domain-containing protein Regulator
  CXG95_RS07075 (CXG95_07080) sinI 1350735..1350911 (-) 177 WP_003183444.1 anti-repressor SinI family protein Regulator

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 14179.31 Da        Isoelectric Point: 10.3094

>NTDB_id=217674 CXG95_RS07035 WP_003183461.1 1346443..1346814(+) (comGF) [Bacillus licheniformis strain PB3]
MFVAGTMASIFHLFLSPERNGSDIHPREWTITAEQILKESRNSIDIRSAGDHQSLAMTNRQGDTVRYEQYQTVIRKRVNG
KGHVPLLQHVKKMRFMIENHLLILEATSLSGKSYRTSIPLYHM

Nucleotide


Download         Length: 372 bp        

>NTDB_id=217674 CXG95_RS07035 WP_003183461.1 1346443..1346814(+) (comGF) [Bacillus licheniformis strain PB3]
ATGTTCGTTGCAGGTACGATGGCCTCGATATTTCATCTGTTTTTATCCCCGGAAAGAAACGGTTCGGATATTCACCCCCG
TGAATGGACGATTACTGCCGAGCAAATATTGAAGGAGTCTAGGAATTCGATTGACATAAGAAGTGCCGGTGATCATCAGT
CACTAGCGATGACAAACCGCCAAGGTGACACCGTTCGCTATGAGCAATATCAGACAGTTATTCGAAAAAGGGTCAATGGA
AAAGGTCATGTGCCTCTATTACAGCATGTCAAAAAAATGAGGTTTATGATTGAAAATCACCTGCTGATCCTTGAAGCGAC
AAGTCTAAGCGGCAAATCATACCGCACGTCTATTCCGCTCTATCATATGTAA

Domains

Predicted by InterProScan.

Putative Competence protein ComGF (ComGF)

(19-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

38.843

98.374

0.382