Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   lmo1397 Genome accession   NC_003210
Coordinates   1423902..1425146 (+) Length   414 a.a.
NCBI ID   NP_464922.1    Uniprot ID   Q8Y793
Organism   Listeria monocytogenes EGD-e     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1418902..1430146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  lmo1393 - 1420076..1421362 (+) 1287 NP_464918.1 peptidase -
  lmo1394 - 1421454..1422185 (+) 732 NP_464919.1 3-ketoacyl-ACP reductase -
  lmo1395 - 1422236..1423165 (+) 930 NP_464920.1 hypothetical protein -
  lmo1396 - 1423255..1423833 (+) 579 NP_464921.1 phosphatidylglycerophosphate synthase -
  lmo1397 cinA 1423902..1425146 (+) 1245 NP_464922.1 competence damage-inducible protein CinA Machinery gene
  lmo1398 recA 1425419..1426465 (+) 1047 NP_464923.1 recombinase A Machinery gene
  lmo1399 - 1426766..1428328 (+) 1563 NP_464924.1 phosphodiesterase -
  lmo1400 - 1428442..1428939 (+) 498 NP_464925.1 N-acetyltransferase -
  lmo1401 - 1428945..1429748 (+) 804 NP_464926.1 hypothetical protein -
  lmo1402 - 1429765..1430127 (+) 363 NP_464927.1 hypothetical protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45675.93 Da        Isoelectric Point: 4.8685

>NTDB_id=21764 lmo1397 NP_464922.1 1423902..1425146(+) (cinA) [Listeria monocytogenes EGD-e]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILADHLQKQLVEDEYHMNKINEYFASRNRTMTENNKLQAVIIKDSVVLNNDYGFAAGMYLKENNHTYVLLPGPPSEMKPM
FTKYANPLLLSENGNQNILESKIMRFFGIGESQLAADLNDLIVNQVNPTIATYAGDNEVVVRITATAKTKEEASSLVKDT
EEEILRRDGTFLYGYGEVSLPELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGHETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=21764 lmo1397 NP_464922.1 1423902..1425146(+) (cinA) [Listeria monocytogenes EGD-e]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACTGAACTATTACTTGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACAGTAGTTGGAGATAATCCAACACGTTTAAAAGAAGTAA
TCGAAATTGCTGAAAAGCGCAGTGATATTTTAATCTTTACTGGGGGACTTGGACCAACTGAAGATGATATAACAAAACAA
ATCTTAGCTGATCATTTACAAAAACAGTTAGTAGAAGATGAATATCATATGAATAAAATTAATGAGTATTTCGCTTCCAG
AAACAGAACCATGACCGAAAACAACAAATTACAAGCGGTTATTATTAAAGATTCCGTGGTATTAAATAATGACTACGGCT
TTGCAGCTGGGATGTACTTAAAAGAAAATAACCATACTTACGTTTTGTTACCAGGACCACCATCTGAAATGAAGCCAATG
TTTACAAAATATGCTAACCCACTTCTTTTAAGTGAAAATGGCAATCAAAATATTTTAGAATCCAAAATCATGCGTTTTTT
TGGTATTGGAGAATCGCAATTAGCTGCTGATTTAAACGATTTGATTGTTAATCAAGTCAACCCAACGATTGCGACATATG
CTGGTGATAATGAAGTCGTGGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGTTCTCTTGTGAAGGATACA
GAGGAGGAAATATTGCGCCGAGATGGCACTTTTTTATATGGATATGGAGAGGTTTCATTGCCTGAATTAGTTACGGCGAT
GTTGCTTGAAAAAGAGCTTACCATCTCTGCTGCAGAAAGTTTTACTGCTGGTTTATTTCAAGCGGAAATTGCTCGATTTC
CTGGTATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCACCT
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCTGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCGGATAGTCTAGAAGGCCATCCTGCTGGCACTATTTGGATTGGGC
TGAGCGTTAAAGGTCATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGACGTGCCGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.611

98.792

0.5
  cinA Streptococcus mitis SK321

49.165

100

0.498
  cinA Streptococcus pneumoniae TIGR4

48.571

100

0.493
  cinA Streptococcus mitis NCTC 12261

48.449

100

0.49
  cinA Streptococcus mutans UA159

49.272

99.517

0.49
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.49
  cinA Streptococcus pneumoniae R6

48.333

100

0.49
  cinA Streptococcus pneumoniae D39

48.095

100

0.488
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386

Multiple sequence alignment