Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   lmo0233 Genome accession   NC_003210
Coordinates   253200..254573 (+) Length   457 a.a.
NCBI ID   NP_463764.1    Uniprot ID   Q48761
Organism   Listeria monocytogenes EGD-e     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 248200..259573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  lmo0229 - 248555..249013 (+) 459 NP_463760.1 CtsR family transcriptional regulator -
  lmo0230 - 249026..249544 (+) 519 NP_463761.1 hypothetical protein -
  lmo0231 - 249541..250563 (+) 1023 NP_463762.1 ATP:guanido phosphotransferase -
  lmo0232 clpC 250592..253054 (+) 2463 NP_463763.1 endopeptidase Clp ATP-binding chain C -
  lmo0233 radA 253200..254573 (+) 1374 NP_463764.1 DNA repair protein RadA Machinery gene
  lmo0234 - 254707..255780 (+) 1074 NP_463765.1 hypothetical protein -
  lmo0235 ispD 255800..256498 (+) 699 NP_463766.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  lmo0236 ispF 256491..256964 (+) 474 NP_463767.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  lmo0237 gltX 256983..258458 (+) 1476 NP_463768.1 glutamyl-tRNA synthetase -
  lmo0238 cysE 258856..259470 (+) 615 NP_463769.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49981.59 Da        Isoelectric Point: 7.9613

>NTDB_id=21753 lmo0233 NP_463764.1 253200..254573(+) (radA) [Listeria monocytogenes EGD-e]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHSDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=21753 lmo0233 NP_463764.1 253200..254573(+) (radA) [Listeria monocytogenes EGD-e]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCAAAATGGATGGGAAAATGTCC
GAATTGCAACGAGTGGAATCAGATGGTAGAAGCCTTAGAACCGTCAAAAAAATCACGCTCAGCTTTCAATCATACAGGAG
AGCCTTCAAAAGCGACTCCAATTACTCAAATAGCAAGTGAAACAGAAAAACGAGTTGAAACAAATATGCCCGAGTTAAAT
AGAGTTCTTGGTGGCGGTGTGGTTCCTGGGTCTATGGTACTTGTCGGAGGAGACCCTGGTATTGGTAAATCAACATTGTT
ATTACAAGTATCAGCGCAACTCACACTTACAAATAAAAAAGTATTGTATATCTCAGGAGAAGAATCAATCAAACAAACGA
AGCTACGGGCAGAACGCTTGCAAGTTTCGGGAGATAATTTATATGTGTATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTAAAACCTGATTTTGTAGTCATTGACTCTATTCAGACTGTTTATCATTCTGATGTTACAAGTGCAGC
AGGGAGTGTTTCTCAAGTTAGGGAATGTACAGCGACATTGATGCGAATTGCTAAAATGCAAAACATCGCTATCTTTATTG
TTGGGCATGTAACTAAGGAAGGTGCTATTGCGGGACCGCGCCTATTAGAACATATGGTTGATACTGTACTCTATTTTGAA
GGGGAGCGTCACCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAACGAAATGGGTATATTTGA
AATGCGAGATGTAGGACTTGTTGAAGTTGCTAATCCTTCCGAGGTATTCTTGGAAGAACGTCTTGAAGGCGCTTCAGGCT
CAACGGTTGTAGCTTCTATGGAAGGAACTCGCCCCGTCCTTGTGGAAATACAAGCGCTTGTTTCGCCAACGATGTTCGGT
AATGCTAAGCGAATGGCGACGGGAATAGACTACAACAAAGTTTCGCTAATTATGGCTGTTTTAGAAAAGCGAGTAGGTTT
AATGTTGCAAAACCAAGATGCTTATTTGAAAGCGGCGGGCGGGGTTAAATTGGATGAGCCTGCAGTGGATTTGGCGGTTG
CAGTCAGTGTTGCATCTAGTTATCGTGATAAACCAACAAGAAGTACGGACTGCTTTATTGGGGAACTTGGACTTACAGGT
GAAATTCGTCGTGTAGCAAGAATTGAACAACGCGTACAAGAAGCAGCAAAACTTGGCTTTAAGCGAATTTTTATTCCTAA
AAATAACGAAGGTAATTGGAAAATACCGAAAGACGTGCAAGTGGTTGGGGTGGAAACGATTGGAGAAGCTTTGAAGAAAG
CTTTACCAGATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-221)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q48761

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.64

99.781

0.685
  radA Streptococcus mitis NCTC 12261

65.275

99.562

0.65
  radA Streptococcus pneumoniae D39

65.044

98.906

0.643
  radA Streptococcus pneumoniae TIGR4

65.044

98.906

0.643
  radA Streptococcus pneumoniae R6

65.044

98.906

0.643
  radA Streptococcus pneumoniae Rx1

65.044

98.906

0.643
  radA Streptococcus mitis SK321

64.823

98.906

0.641

Multiple sequence alignment