Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CXB69_RS09415 Genome accession   NZ_CP025206
Coordinates   1894908..1896638 (+) Length   576 a.a.
NCBI ID   WP_061827392.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0074     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1889908..1901638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB69_RS09375 (CXB69_09365) mgsA 1890340..1890762 (+) 423 WP_011374855.1 methylglyoxal synthase -
  CXB69_RS09380 (CXB69_09370) - 1890846..1891541 (+) 696 WP_011374854.1 YoaK family protein -
  CXB69_RS09385 (CXB69_09375) - 1891538..1891720 (-) 183 WP_035146748.1 hypothetical protein -
  CXB69_RS09390 (CXB69_09380) - 1891713..1892033 (-) 321 WP_011374852.1 hypothetical protein -
  CXB69_RS09395 (CXB69_09385) - 1892054..1892710 (-) 657 WP_035146741.1 type II CAAX endopeptidase family protein -
  CXB69_RS09400 (CXB69_09390) - 1892912..1893112 (+) 201 WP_004270328.1 cold-shock protein -
  CXB69_RS09405 (CXB69_09395) - 1893310..1894038 (-) 729 WP_011374850.1 ion transporter -
  CXB69_RS09410 (CXB69_09400) - 1894243..1894884 (+) 642 WP_035146737.1 TetR family transcriptional regulator -
  CXB69_RS09415 (CXB69_09405) rcrP 1894908..1896638 (+) 1731 WP_061827392.1 ABC transporter ATP-binding protein Regulator
  CXB69_RS09420 (CXB69_09410) rcrQ 1896638..1898515 (+) 1878 WP_035146729.1 ABC transporter ATP-binding protein Regulator
  CXB69_RS09425 (CXB69_09415) - 1898613..1899623 (+) 1011 WP_035146726.1 serine hydrolase domain-containing protein -
  CXB69_RS09430 (CXB69_09420) manA 1899725..1900699 (+) 975 WP_016265273.1 mannose-6-phosphate isomerase, class I -
  CXB69_RS09435 (CXB69_09425) - 1900773..1901417 (+) 645 WP_016265272.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63782.95 Da        Isoelectric Point: 6.4076

>NTDB_id=217522 CXB69_RS09415 WP_061827392.1 1894908..1896638(+) (rcrP) [Latilactobacillus sakei strain WiKim0074]
MIKLAKKRMSGLAVFGAVLFMVIQVVSNLYLPNLTSDIVNNGIAKGDIDYIWQAGFKMLGFSLISILAAICNVYLAAKTS
QGLGQKLRSDIYRKVINFSHDEMDQVGTSSLITRTTNDVVQIQNVVMMFLRMMIMAPIMLIGASFLAYQKNAQLTSIFVV
VLPLMAIFIGVVMYFAVPLFKAMQKKTDRINLVFREGLTGVRVIRAFRRDKFEQERFDDANLDYTQNAKKVYSIMSVMLP
VMTLIMSGTNIAITWMGGHLIADQAMQVGNLLAFMTYAMQILMSFMMLSMVFVFIPRAQASAVRINEVLDLQTPIENPEN
PKSFTDQTVSLAFDNVNFRYQNAEKLALEKIDFQASAGQTVAIIGGTGSGKSTLVNLIPRFYDVEAGQVQVDGLNVKDVT
LHDIHEQVAFVPQKANLFTGTIRENMQYGNPDATDDQIWHALEIAQSKDFVSELDGGLDSHVEQGGGNFSGGQRQRLAIA
RALVKRASVYVFDDSFSALDFKTDALLRKALKEDTEIQKSVVVIVGQRVSTVADADTILVLDEGQMVGKGTHAQLKATNA
TYQEIINSQIREGDEA

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=217522 CXB69_RS09415 WP_061827392.1 1894908..1896638(+) (rcrP) [Latilactobacillus sakei strain WiKim0074]
ATGATTAAACTTGCAAAAAAGAGAATGTCGGGCTTAGCCGTTTTCGGTGCTGTCTTATTCATGGTGATTCAAGTTGTCAG
TAACTTGTATCTCCCTAATTTGACGTCTGATATTGTCAATAACGGGATTGCCAAAGGAGATATTGATTATATCTGGCAAG
CCGGCTTTAAAATGCTCGGTTTTTCATTGATCAGTATCCTAGCCGCAATCTGTAACGTTTATTTAGCTGCTAAGACATCA
CAAGGTCTGGGGCAAAAATTACGATCAGATATTTATCGAAAGGTCATCAATTTCTCACACGATGAAATGGACCAAGTGGG
GACCTCTTCACTGATTACACGGACGACCAATGATGTTGTTCAAATTCAAAATGTGGTAATGATGTTCTTACGAATGATGA
TCATGGCCCCTATTATGTTGATTGGTGCCAGCTTCTTGGCTTACCAAAAGAACGCGCAATTAACATCAATCTTCGTCGTT
GTCTTACCATTGATGGCAATCTTTATCGGTGTCGTGATGTACTTTGCCGTGCCACTTTTCAAAGCGATGCAAAAGAAGAC
TGACCGGATTAACTTAGTTTTCCGTGAAGGCTTAACAGGGGTGCGGGTAATCCGTGCATTCCGTCGCGATAAGTTCGAAC
AGGAACGTTTTGACGATGCGAACTTAGATTACACACAAAATGCTAAAAAGGTCTACAGTATCATGTCTGTCATGTTACCT
GTGATGACATTGATTATGAGTGGGACAAACATTGCAATCACTTGGATGGGTGGTCACTTAATTGCTGATCAAGCCATGCA
AGTGGGGAACTTATTAGCCTTCATGACTTATGCGATGCAAATCTTAATGAGTTTCATGATGCTTTCAATGGTTTTCGTCT
TCATTCCACGGGCACAAGCATCAGCCGTTCGGATTAATGAAGTCTTGGATTTACAAACACCAATTGAAAATCCAGAAAAT
CCCAAGAGTTTTACAGATCAAACTGTCAGCTTGGCCTTCGATAATGTTAACTTCCGCTACCAAAATGCAGAAAAATTAGC
CTTAGAGAAGATTGATTTCCAAGCATCTGCTGGTCAAACCGTTGCGATTATCGGGGGGACTGGTTCAGGTAAATCAACCT
TGGTTAACTTGATTCCGCGTTTTTACGACGTTGAAGCCGGCCAAGTCCAAGTTGATGGGTTAAATGTCAAAGATGTGACA
TTGCATGATATTCATGAACAAGTCGCATTTGTACCGCAAAAAGCCAATCTCTTTACAGGGACGATTCGCGAAAATATGCA
ATATGGGAATCCGGATGCAACTGATGATCAGATTTGGCATGCACTTGAAATTGCCCAATCGAAGGATTTCGTTAGCGAAC
TTGATGGTGGCTTAGACAGTCACGTTGAACAAGGTGGCGGTAACTTCTCAGGTGGTCAACGTCAACGATTAGCGATTGCC
CGGGCATTAGTTAAACGCGCATCAGTTTATGTTTTTGATGATTCATTTTCAGCTTTAGATTTCAAGACGGATGCCCTTTT
ACGCAAAGCCTTGAAGGAAGATACTGAAATTCAAAAGAGTGTCGTCGTCATTGTTGGACAACGGGTCTCAACTGTGGCTG
ATGCCGATACAATCTTGGTCTTAGATGAAGGCCAAATGGTTGGTAAAGGCACGCATGCCCAATTAAAGGCAACAAATGCA
ACTTACCAAGAAATTATCAATTCACAAATCAGAGAGGGGGATGAAGCCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(348-495)

ABC transporter transmembrane region (ABC_membrane)

(15-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.376

97.917

0.415