Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ADP71_RS04740 Genome accession   NZ_CP019644
Coordinates   958186..959145 (-) Length   319 a.a.
NCBI ID   WP_019959057.1    Uniprot ID   A0A6M4CAE6
Organism   Vitreoscilla sp. C1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 953186..964145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADP71_RS04715 (ADP71_11860) - 953999..954433 (+) 435 WP_104931607.1 OsmC family protein -
  ADP71_RS04720 (ADP71_11870) - 954476..955420 (+) 945 WP_019959053.1 hypothetical protein -
  ADP71_RS04725 (ADP71_11890) - 955495..956475 (-) 981 WP_019959054.1 ABC transporter substrate-binding protein -
  ADP71_RS04730 (ADP71_11910) - 956491..957255 (-) 765 WP_019959055.1 ATP-binding cassette domain-containing protein -
  ADP71_RS04735 (ADP71_11920) - 957246..958199 (-) 954 WP_019959056.1 iron chelate uptake ABC transporter family permease subunit -
  ADP71_RS04740 (ADP71_11930) ceuB 958186..959145 (-) 960 WP_019959057.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  ADP71_RS04745 (ADP71_11950) - 959465..961471 (-) 2007 WP_171460929.1 TonB-dependent receptor -
  ADP71_RS04750 (ADP71_11970) - 961682..962467 (+) 786 WP_104931611.1 hypothetical protein -
  ADP71_RS04755 (ADP71_11980) vhb 962702..963142 (+) 441 WP_019959060.1 hemoglobin Vhb -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 34394.23 Da        Isoelectric Point: 9.9609

>NTDB_id=217502 ADP71_RS04740 WP_019959057.1 958186..959145(-) (ceuB) [Vitreoscilla sp. C1]
MLKLRFLLPLTFLLGITSIFIGVGNVSLSGLLAGRPEDWLLFTQSRLPRLLSILIAGASLSVSGLILQSLSRNRFVSPTT
AGLEDSARFGVLLALIMLPAATGWLQTSLAIATTFVGALIFMAILNTLKHRDTVFVPLVGMMFGNIISAITVFFALQFDL
LQNINAWLQGDFSSVLSGRYETLFLSVPALIFAYLYAQRFVLAGMGEDFATNLGLNYKRTLNLGLALVSIVTAVVIVTVG
SIPFLGLIVPNLVALYLGDNLKLTLPHTAVVGALLVLVCDIIGRVVIYPYEISVSLMMGVIGSAVFLAMLLKRYRHGGI

Nucleotide


Download         Length: 960 bp        

>NTDB_id=217502 ADP71_RS04740 WP_019959057.1 958186..959145(-) (ceuB) [Vitreoscilla sp. C1]
ATGTTGAAACTGCGTTTTTTACTTCCGCTTACCTTCTTACTTGGCATAACATCCATTTTCATTGGTGTGGGCAATGTCAG
CTTATCGGGTTTGCTGGCGGGGCGGCCTGAAGATTGGCTTTTATTCACCCAAAGCCGCTTGCCACGCTTATTGTCCATTC
TCATTGCAGGCGCAAGCTTAAGCGTTTCTGGTTTGATTTTACAAAGTTTAAGCCGCAACCGCTTTGTCTCGCCCACCACC
GCAGGCTTAGAAGATTCGGCAAGGTTCGGTGTCTTACTCGCCTTAATTATGTTACCCGCTGCCACAGGCTGGTTGCAAAC
ATCTTTGGCAATCGCCACTACCTTCGTCGGTGCTTTGATTTTCATGGCCATTTTAAACACCTTAAAACACCGTGATACAG
TTTTTGTGCCTTTGGTTGGCATGATGTTTGGTAACATCATCAGCGCTATTACGGTATTTTTTGCCTTGCAATTTGATTTG
CTGCAAAACATCAATGCTTGGCTACAAGGCGACTTTTCCAGCGTTTTGAGCGGTCGCTACGAAACCTTGTTTTTAAGCGT
ACCTGCTTTGATTTTTGCTTATTTGTATGCACAACGTTTTGTACTGGCAGGTATGGGCGAAGACTTTGCGACCAATTTGG
GTTTGAATTACAAACGCACACTCAATTTGGGTTTGGCATTGGTGTCCATTGTCACCGCAGTGGTCATCGTCACAGTCGGC
TCCATTCCGTTTTTGGGCTTGATTGTTCCCAATTTGGTGGCTTTGTATTTGGGCGATAATTTGAAGCTGACTTTGCCGCA
TACAGCGGTGGTGGGTGCTTTGTTGGTATTGGTGTGTGACATCATTGGTCGGGTGGTGATTTATCCCTATGAAATTTCAG
TCAGCTTGATGATGGGCGTGATTGGCAGCGCTGTATTCTTAGCCATGTTACTCAAGAGGTACCGTCATGGCGGAATCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4CAE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.211

99.373

0.489

Multiple sequence alignment