Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ADP71_RS02260 Genome accession   NZ_CP019644
Coordinates   462264..463631 (+) Length   455 a.a.
NCBI ID   WP_019957335.1    Uniprot ID   -
Organism   Vitreoscilla sp. C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 457264..468631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADP71_RS02235 (ADP71_05600) - 457654..458868 (+) 1215 WP_171460858.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ADP71_RS02240 (ADP71_05620) - 458853..459467 (+) 615 WP_104931395.1 PilX N-terminal domain-containing pilus assembly protein -
  ADP71_RS02245 (ADP71_05630) - 459496..459921 (+) 426 WP_171460859.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ADP71_RS02250 (ADP71_05640) hpnD 460008..460859 (+) 852 WP_171460860.1 presqualene diphosphate synthase HpnD -
  ADP71_RS02255 (ADP71_05650) hpnE 460856..462160 (+) 1305 WP_104931398.1 hydroxysqualene dehydroxylase HpnE -
  ADP71_RS02260 (ADP71_05660) radA 462264..463631 (+) 1368 WP_019957335.1 DNA repair protein RadA Machinery gene
  ADP71_RS02265 (ADP71_05690) - 463654..465795 (+) 2142 WP_171460861.1 ATP-binding protein -
  ADP71_RS02270 (ADP71_05700) - 465860..466351 (-) 492 WP_019957337.1 DUF4442 domain-containing protein -
  ADP71_RS02275 (ADP71_05710) - 466348..467229 (-) 882 WP_019957338.1 folate-binding protein YgfZ -
  ADP71_RS02280 (ADP71_05720) nemA 467230..468351 (-) 1122 WP_019957339.1 N-ethylmaleimide reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49142.48 Da        Isoelectric Point: 7.4274

>NTDB_id=217497 ADP71_RS02260 WP_019957335.1 462264..463631(+) (radA) [Vitreoscilla sp. C1]
MAKVKTQYQCTECGGSTLKWQGQCPACGQWNTLQESVILPESQNRFDAWSQTSSKVQNLADITAEEVPRSSTGLSELDRV
LGGGLVEGAVVLIGGDPGIGKSTLLLQANALMGANRACLYVSGEESAQQVALRAQRLSLNPAHIHLLAEIRLEAIVQHLR
ERQPKVAVIDSIQTLYSDQITSAPGSVSQVRECAAQLTRVAKQTGVTILLVGHVTKDGAIAGPRVLEHMVDAVLYFEGDT
HSNYRMIRAIKNRFGAANELGVFAMTDKGLKGVANPSAIFLASYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFTPK
RLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKIMEPAADLAVILAMVSSHRNRPLPQKMIVFGEIGLSGEVR
PVSRGQERLKEAEKLGFTHAIIPKANLPRQKSDFPQLTLHGVSSIQEAVEICRRD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=217497 ADP71_RS02260 WP_019957335.1 462264..463631(+) (radA) [Vitreoscilla sp. C1]
ATGGCCAAAGTTAAAACGCAATACCAATGTACAGAGTGTGGTGGTAGCACTTTGAAATGGCAGGGGCAATGTCCTGCTTG
TGGGCAATGGAATACCTTGCAAGAAAGTGTCATTTTGCCTGAAAGCCAAAACCGTTTTGATGCGTGGAGCCAAACCAGCA
GCAAAGTGCAAAACTTGGCAGATATTACCGCTGAAGAAGTGCCTCGCTCTAGTACAGGTTTGTCTGAATTAGACCGTGTG
TTAGGTGGCGGTTTGGTTGAGGGCGCGGTGGTTTTGATTGGTGGCGATCCTGGTATAGGTAAATCTACTTTATTGTTACA
AGCGAACGCATTGATGGGGGCTAATCGTGCTTGCTTGTATGTTTCAGGCGAAGAGTCGGCGCAGCAAGTGGCTTTGCGGG
CACAGCGTTTGAGCTTGAATCCTGCACACATTCACTTATTGGCAGAAATTCGTCTAGAGGCCATTGTGCAACATCTGCGC
GAGCGCCAGCCTAAAGTGGCGGTCATCGATTCGATTCAAACGCTGTATTCAGATCAAATCACTTCTGCTCCAGGCTCAGT
GTCGCAAGTGCGGGAGTGTGCCGCGCAATTGACACGTGTGGCCAAGCAAACAGGTGTAACCATTTTGTTGGTGGGGCATG
TGACCAAAGATGGCGCCATTGCAGGACCTCGTGTGTTAGAGCATATGGTGGATGCGGTTTTGTATTTTGAAGGCGATACG
CACAGTAATTATCGTATGATACGAGCCATTAAAAACCGTTTTGGTGCTGCCAATGAGCTCGGTGTGTTTGCGATGACGGA
CAAAGGTTTGAAAGGTGTGGCAAACCCATCAGCGATTTTTTTGGCGTCTTATCGGGATGATGTCCCCGGTTCTTGTGTAT
TGGTCACGCAAGAAGGCAGTCGTCCATTATTGGTAGAAATTCAAGCTTTGGTAGACGATGCACATGGTTTCACACCCAAA
CGCCTGACTGTAGGCTTGGAGCAAAATCGTTTGGCGATGCTATTGGCCGTCCTCAATCGCCATGCAGGCATTGCTTGTTT
TGATCAAGATGTGTTTTTGAATGCGGTGGGTGGCGTTAAAATCATGGAGCCTGCTGCTGACTTGGCAGTGATTTTGGCCA
TGGTCTCTAGCCATCGCAATCGACCTTTGCCGCAAAAAATGATTGTGTTTGGTGAAATAGGTTTGTCAGGCGAGGTGCGT
CCTGTATCTCGTGGGCAAGAGCGTTTGAAAGAGGCTGAGAAATTGGGTTTTACCCATGCCATCATTCCCAAAGCCAATTT
GCCGCGTCAAAAAAGTGATTTTCCCCAACTAACCCTACATGGGGTATCTTCTATCCAAGAAGCTGTTGAAATTTGTCGTC
GCGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.276

94.725

0.486
  radA Streptococcus pneumoniae Rx1

46.903

99.341

0.466
  radA Streptococcus pneumoniae R6

46.903

99.341

0.466
  radA Streptococcus pneumoniae TIGR4

46.903

99.341

0.466
  radA Streptococcus pneumoniae D39

46.903

99.341

0.466
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466
  radA Streptococcus mitis SK321

46.785

99.121

0.464

Multiple sequence alignment