Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CXB69_RS05555 Genome accession   NZ_CP025206
Coordinates   1115842..1116717 (-) Length   291 a.a.
NCBI ID   WP_016264319.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0074     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1110842..1121717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB69_RS05525 (CXB69_05520) nrdI 1111445..1111912 (+) 468 WP_204357203.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  CXB69_RS05530 (CXB69_05525) - 1111909..1112577 (-) 669 WP_016264323.1 HAD hydrolase-like protein -
  CXB69_RS05535 (CXB69_05530) - 1112958..1113722 (-) 765 WP_035145482.1 prolyl oligopeptidase family serine peptidase -
  CXB69_RS05540 (CXB69_05535) - 1113759..1114433 (-) 675 WP_016264321.1 DUF1129 domain-containing protein -
  CXB69_RS05545 (CXB69_05540) ychF 1114451..1115551 (-) 1101 WP_011373736.1 redox-regulated ATPase YchF -
  CXB69_RS05550 (CXB69_05545) - 1115575..1115823 (-) 249 WP_016264320.1 DUF951 domain-containing protein -
  CXB69_RS05555 (CXB69_05550) spo0J 1115842..1116717 (-) 876 WP_016264319.1 ParB/RepB/Spo0J family partition protein Regulator
  CXB69_RS05560 (CXB69_05555) - 1116707..1117474 (-) 768 WP_016264318.1 ParA family protein -
  CXB69_RS05565 (CXB69_05560) noc 1117486..1118385 (-) 900 WP_016264317.1 nucleoid occlusion protein -
  CXB69_RS05570 (CXB69_05565) rsmG 1118385..1119125 (-) 741 WP_011373731.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  CXB69_RS05575 (CXB69_05570) - 1119494..1120834 (+) 1341 WP_011373730.1 nucleobase:cation symporter-2 family protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32411.38 Da        Isoelectric Point: 9.8304

>NTDB_id=217495 CXB69_RS05555 WP_016264319.1 1115842..1116717(-) (spo0J) [Latilactobacillus sakei strain WiKim0074]
MVNKNGKGLGRGLEAVFSAFEGPNKNRADELVEEIALEDIRPNPYQPRKTFDEAALAELAASIKKSGVFQPIIVRKSING
YELIAGERRFRASKLAGKTTIPAITRQFDEEAMMEIAVLENLQREDLTPLEEAQAYDTLLKKLNLTQAEVSERLGKSRPY
IANYLRLLGLPADVKQLLQEGQLSMGQARTLLSLKKKSQISALAKRTIAESLTVRQLEQLVNQMNQTKAAKVAKTKIKSP
YIQASENQLVDKFDTKVNIAMNSKGRGKIEIDYGTVEDLNRILALLDVNID

Nucleotide


Download         Length: 876 bp        

>NTDB_id=217495 CXB69_RS05555 WP_016264319.1 1115842..1116717(-) (spo0J) [Latilactobacillus sakei strain WiKim0074]
ATGGTCAATAAAAATGGTAAAGGACTCGGTCGAGGACTCGAAGCTGTTTTTTCAGCATTTGAAGGACCCAATAAGAATCG
TGCGGATGAACTCGTTGAAGAGATTGCCCTCGAGGATATTCGTCCTAATCCTTATCAACCACGTAAAACGTTTGATGAAG
CGGCACTAGCGGAACTTGCTGCTTCCATTAAAAAATCAGGCGTTTTCCAACCGATTATTGTGCGTAAAAGCATTAATGGT
TACGAATTAATCGCTGGCGAACGTCGTTTCCGTGCTTCTAAATTAGCTGGCAAAACTACGATTCCAGCGATTACCCGTCA
ATTCGATGAAGAAGCGATGATGGAAATTGCAGTCTTGGAAAATCTTCAACGGGAAGATTTAACACCGCTAGAAGAAGCGC
AAGCCTACGACACCCTTTTGAAGAAGTTAAACTTAACGCAAGCTGAAGTGTCAGAACGCTTAGGCAAGAGTCGCCCTTAC
ATTGCCAATTACTTACGCCTGTTGGGCTTGCCAGCAGATGTTAAGCAATTGTTGCAAGAAGGCCAACTCTCAATGGGACA
AGCACGGACGCTTTTATCATTGAAGAAAAAGAGTCAAATTAGCGCCCTCGCCAAGCGGACGATTGCCGAAAGTTTAACGG
TGCGCCAATTAGAACAACTCGTCAACCAAATGAATCAAACCAAAGCGGCTAAAGTCGCTAAGACTAAGATTAAATCACCT
TACATTCAAGCGAGTGAAAACCAATTAGTTGATAAATTCGATACCAAGGTTAATATTGCGATGAACAGTAAGGGCCGGGG
GAAAATCGAAATTGATTACGGCACGGTAGAGGATTTAAACCGAATCTTGGCTTTACTAGATGTCAATATTGATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(139-166)

HTH domain found in ParB protein (HTH_ParB)

(173-223)

ParB/Sulfiredoxin domain (ParB_N)

(33-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.629

86.254

0.368