Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   B0X71_RS07935 Genome accession   NZ_CP019640
Coordinates   1556720..1558435 (+) Length   571 a.a.
NCBI ID   WP_077588912.1    Uniprot ID   A0A1Q2KXV1
Organism   Planococcus lenghuensis strain Y42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1551720..1563435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0X71_RS07905 (B0X71_07915) xseB 1552084..1552320 (+) 237 WP_077588907.1 exodeoxyribonuclease VII small subunit -
  B0X71_RS07910 (B0X71_07920) - 1552317..1553195 (+) 879 WP_077588908.1 polyprenyl synthetase family protein -
  B0X71_RS07915 (B0X71_07925) dxs 1553289..1555193 (+) 1905 WP_077588909.1 1-deoxy-D-xylulose-5-phosphate synthase -
  B0X71_RS07920 (B0X71_07930) - 1555193..1556011 (+) 819 WP_077590941.1 TlyA family RNA methyltransferase -
  B0X71_RS07930 (B0X71_07940) ahrC 1556250..1556699 (+) 450 WP_077588911.1 transcriptional regulator AhrC/ArgR -
  B0X71_RS07935 (B0X71_07945) recN 1556720..1558435 (+) 1716 WP_077588912.1 DNA repair protein RecN Machinery gene
  B0X71_RS07940 (B0X71_07950) spo0A 1558452..1559210 (+) 759 WP_077588913.1 sporulation transcription factor Spo0A -
  B0X71_RS07945 (B0X71_07955) - 1559377..1559748 (+) 372 WP_077588914.1 DUF2500 domain-containing protein -
  B0X71_RS07950 (B0X71_07960) - 1559828..1560061 (-) 234 WP_077588915.1 DUF2627 domain-containing protein -
  B0X71_RS07955 (B0X71_07965) - 1560184..1562232 (+) 2049 WP_077588916.1 sigma 54-interacting transcriptional regulator -
  B0X71_RS07960 (B0X71_07970) yqiS 1562368..1563270 (+) 903 WP_408634139.1 phosphate butyryltransferase -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 63760.17 Da        Isoelectric Point: 4.7383

>NTDB_id=217471 B0X71_RS07935 WP_077588912.1 1556720..1558435(+) (recN) [Planococcus lenghuensis strain Y42]
MLRELDIRNFAIIQELSVGFTDGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGAKKAEIEGLFSLETDSHPVFSK
LEEFGIPHEDGDILLRREINDKGKTVCRVNGKLVTIAILREVGAALIDIHGQHETQELMDEKKHIRLLDQFAGSRLDQAK
ESYTKTYDNYMKLKREFSSYNENEQQIAQRIDLLTFQLDEINAAGLQPGEEETLLADRKRLQNFTRIYEGLSQAYEAIQG
ESKGLDWIGNAMSELEHAAAVDDEFQETAESLSGAFYQIQDTATVVKRSLDSMEFDPERLNEIEDRLSAIQSLKRKYGAS
IKEILQYADKQADELDRLVNRDKRIQLDQERLSQLAADLTVEAEELTVLRKKTAKELESAIMEQLTALHMGKAAFQVQFD
ELPEGKFDRNGRDAISFRISTNVGEPLKALTKVASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISMHSQVLCISHLPQVAAMADQHLFIEKKVEQERTVTSVEELDGAERTKEMSRMLSGAEITELTLQHAEELLTLADER
KSGMRAAAGTM

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=217471 B0X71_RS07935 WP_077588912.1 1556720..1558435(+) (recN) [Planococcus lenghuensis strain Y42]
ATGCTCAGGGAATTGGATATACGGAATTTCGCAATTATCCAGGAGCTGTCTGTCGGATTCACAGACGGGCTGACCGTGCT
GACAGGTGAAACAGGAGCCGGTAAATCGATCATCATCGATGCGGTCCAGCTGCTGGCCGGCGGACGCGGCAGCCAGGAAT
TCATCCGCCACGGTGCGAAAAAGGCGGAAATTGAAGGATTGTTCTCACTCGAGACGGACAGCCATCCGGTATTCAGTAAA
CTGGAGGAGTTCGGCATTCCGCATGAGGACGGCGATATCCTGCTCCGCCGGGAAATCAATGACAAAGGGAAAACGGTCTG
CCGGGTGAACGGCAAGCTCGTCACCATCGCGATTTTGCGGGAAGTGGGGGCGGCCCTCATTGATATCCATGGCCAGCATG
AAACGCAGGAACTCATGGATGAAAAAAAGCACATCCGGCTGCTTGACCAATTCGCCGGTTCACGGCTGGACCAGGCGAAG
GAAAGCTATACGAAGACGTACGATAATTACATGAAACTGAAGCGGGAGTTTTCTTCCTATAATGAGAACGAACAGCAGAT
CGCCCAGCGTATCGATTTGCTGACATTCCAGCTGGATGAGATAAATGCGGCCGGCCTTCAGCCGGGCGAAGAAGAAACGC
TGCTTGCTGACCGCAAGCGGCTGCAGAACTTCACGAGAATCTATGAAGGCCTGTCGCAAGCCTATGAAGCGATCCAAGGG
GAATCCAAAGGGCTGGACTGGATCGGCAACGCCATGTCGGAACTTGAACATGCGGCAGCGGTCGATGACGAGTTCCAGGA
GACCGCCGAATCGCTCTCCGGTGCCTTTTATCAGATTCAGGACACAGCAACCGTCGTCAAACGCTCACTGGATTCCATGG
AATTCGATCCCGAGCGGCTGAATGAAATCGAAGACCGGCTATCAGCGATCCAGTCACTCAAGCGGAAATACGGGGCTTCA
ATTAAAGAGATCTTGCAATATGCGGACAAACAGGCCGATGAACTTGACCGGCTTGTCAATCGGGATAAACGGATTCAGCT
GGATCAGGAACGGCTGAGCCAATTGGCGGCGGATCTGACCGTTGAGGCGGAAGAACTGACCGTGCTCCGGAAAAAGACAG
CGAAAGAGCTGGAGAGCGCCATCATGGAGCAATTGACGGCTCTTCATATGGGAAAAGCGGCATTTCAAGTGCAATTTGAT
GAGCTGCCGGAAGGCAAATTCGACCGGAATGGACGGGACGCCATCTCGTTCCGGATTTCAACAAACGTCGGAGAGCCGTT
GAAGGCGCTGACGAAAGTGGCATCCGGCGGCGAACTATCCCGGATGATGCTTGCCTTGAAAACCATTTTCTCCCGGCACC
AAGGCATCACCTCCATCATTTTTGATGAAGTCGATACGGGCGTGAGCGGCCGGGTGGCTCAGGCGATTGCCGAGAAGATT
GCAGCCATCTCCATGCATTCCCAAGTATTGTGTATTTCTCATTTACCGCAAGTGGCCGCTATGGCAGATCAGCATTTATT
CATCGAGAAAAAAGTGGAACAGGAGCGGACTGTGACTTCTGTGGAAGAATTGGACGGTGCGGAACGGACAAAAGAAATGA
GCCGCATGCTGTCCGGGGCAGAAATTACCGAATTGACGCTGCAGCATGCCGAGGAGCTGCTGACACTGGCAGACGAGCGG
AAGTCAGGCATGCGGGCGGCAGCCGGAACGATGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q2KXV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.478

100

0.518

Multiple sequence alignment