Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   B0X71_RS07395 Genome accession   NZ_CP019640
Coordinates   1453353..1455731 (+) Length   792 a.a.
NCBI ID   WP_077588814.1    Uniprot ID   A0A1Q2KZ66
Organism   Planococcus lenghuensis strain Y42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1448353..1460731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0X71_RS07375 (B0X71_07380) cymR 1449687..1450106 (+) 420 WP_077588810.1 cysteine metabolism transcriptional regulator CymR -
  B0X71_RS07380 (B0X71_07385) - 1450119..1451249 (+) 1131 WP_077588811.1 cysteine desulfurase family protein -
  B0X71_RS20855 - 1451286..1451453 (+) 168 WP_156889810.1 hypothetical protein -
  B0X71_RS07385 (B0X71_07390) mnmA 1451551..1452663 (+) 1113 WP_077588812.1 tRNA 2-thiouridine(34) synthase MnmA -
  B0X71_RS07390 (B0X71_07395) - 1452677..1453333 (+) 657 WP_198038700.1 lipopolysaccharide assembly protein LapB -
  B0X71_RS07395 (B0X71_07400) recD2 1453353..1455731 (+) 2379 WP_077588814.1 ATP-dependent RecD-like DNA helicase Machinery gene
  B0X71_RS07400 (B0X71_07405) alaS 1456813..1459443 (+) 2631 WP_077588815.1 alanine--tRNA ligase -
  B0X71_RS07405 (B0X71_07410) - 1459527..1459799 (+) 273 WP_077590932.1 IreB family regulatory phosphoprotein -
  B0X71_RS07410 (B0X71_07415) ruvX 1459796..1460212 (+) 417 WP_077588816.1 Holliday junction resolvase RuvX -
  B0X71_RS07415 (B0X71_07420) - 1460225..1460524 (+) 300 WP_077588817.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 88056.40 Da        Isoelectric Point: 4.8854

>NTDB_id=217469 B0X71_RS07395 WP_077588814.1 1453353..1455731(+) (recD2) [Planococcus lenghuensis strain Y42]
MTQQPDLFEQEKQFILGRPVVSIFHNPENLFTIAKVKISKTNTSYEDKEIVVSGYFPELSTDENYKFTGSVKQHPKYGTQ
FQAEAFSQEVPETEQGIIHYLSSDMFPGIGRKTAETIVKKLGKDTIQKILDDPSVLDVVPKLSDDKKETLQQGLESNLGL
ERVIIQLNEWGFGPQVAMRIYQAYREETLETLSKNPYRLIEEIEGVGFQRADELGARLGLRGSHPDRIKASILHLLNHSS
LSDGHVYAESEWIIPAAKNMLETSQQEPVEIEAISKAIIELAEEGRVSGEETRLYMPSLYYSEVGIASKLQQLIESQEER
DGFPSSEVRMAIGEAEERLGVTYAETQAAAIEKSVNSSVMVLTGGPGTGKTTVVRGLVEVYAELHGLSLDPKEYAKKKEP
FPIILAAPTGRAAKRLNESTGLPAMTIHRLLGFTGQEKEEETEREIEGKLIIIDEVSMVDTWLAHQLLKALPDDVQLILV
GDQDQLPPVGPGQVLRDLLDSKAVPVIELKEIYRQAEGSSIVTLAHQMKQGQFPQDILNKTGDRSFIRAGTEQIPSVVEA
VVKNAITKGHSIRDIQVLAPMYRGPAGIDALNKLIQELVNGNPDGSRKELTFGDITYRIGDKVLQLVNQPESQVFNGDMG
EVIAIFKAKENVEKQDLLVVSFDGIEVTYQRSDLNQLTLAYCCSIHKAQGSEFPIVVMPVVRSYMKMLRRNLLYTGITRS
KNFLILCGDPEVFRFGITRSDGTERQTTLKSRLAKPVEEKADGPVRLTPDNLNDIPPLIGMDGVTPQDFVGR

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=217469 B0X71_RS07395 WP_077588814.1 1453353..1455731(+) (recD2) [Planococcus lenghuensis strain Y42]
ATGACACAACAGCCGGATTTATTCGAACAGGAAAAACAGTTTATATTGGGCCGTCCGGTCGTCTCCATTTTTCACAACCC
GGAGAATTTGTTTACGATCGCGAAAGTGAAAATCTCGAAAACGAACACCTCATATGAAGACAAGGAAATTGTCGTTTCGG
GTTATTTTCCGGAGCTGTCGACGGACGAGAATTATAAATTCACGGGAAGCGTGAAGCAGCATCCGAAATACGGGACGCAG
TTCCAGGCGGAAGCGTTTTCTCAGGAAGTGCCGGAGACGGAGCAGGGCATCATCCATTATTTATCGAGTGATATGTTCCC
GGGCATCGGCCGGAAAACGGCAGAGACGATTGTGAAGAAACTGGGGAAAGACACCATCCAGAAAATCCTCGATGACCCAT
CTGTGCTCGATGTTGTACCGAAATTATCGGATGATAAAAAAGAGACGCTGCAGCAGGGGCTTGAGTCGAATCTCGGACTG
GAGCGCGTCATCATCCAGCTGAACGAGTGGGGATTCGGGCCGCAAGTGGCAATGCGAATTTATCAGGCATATCGCGAAGA
GACGCTTGAAACTTTATCCAAGAACCCGTACCGGCTCATCGAGGAAATCGAAGGTGTCGGTTTTCAGCGGGCCGATGAGC
TCGGTGCCCGGCTTGGTTTGCGGGGCAGCCATCCGGACCGGATCAAGGCTTCGATCCTGCATTTGCTGAATCATTCATCG
CTGTCGGATGGGCATGTGTATGCGGAATCGGAATGGATCATTCCGGCTGCGAAAAACATGCTTGAGACGAGCCAGCAGGA
GCCGGTCGAAATCGAAGCGATTTCAAAAGCGATCATTGAACTGGCCGAAGAAGGCCGGGTATCCGGCGAAGAAACTCGGC
TCTACATGCCATCACTTTATTATTCGGAAGTGGGGATCGCCTCCAAACTTCAGCAGCTGATCGAATCCCAGGAAGAGCGG
GACGGATTTCCGTCTTCGGAAGTCCGCATGGCGATCGGGGAAGCGGAAGAGCGGCTCGGGGTCACGTATGCGGAAACGCA
GGCGGCGGCTATCGAGAAAAGCGTCAATTCATCGGTGATGGTATTGACGGGCGGACCCGGCACGGGAAAAACGACGGTTG
TGCGCGGGCTTGTGGAAGTGTATGCGGAACTGCACGGACTGTCACTCGACCCGAAAGAATACGCCAAGAAAAAAGAGCCG
TTCCCGATCATTCTCGCGGCGCCGACCGGCCGGGCTGCCAAGCGGCTGAATGAGTCGACCGGGCTTCCGGCTATGACGAT
TCACCGGCTGCTCGGTTTCACCGGCCAGGAAAAAGAAGAAGAGACCGAGCGGGAAATTGAAGGCAAACTGATCATTATCG
ATGAAGTATCGATGGTCGATACGTGGCTTGCCCATCAATTGCTGAAAGCGTTGCCGGATGACGTCCAACTGATCCTCGTC
GGCGACCAGGACCAGTTGCCGCCGGTCGGTCCCGGGCAAGTGCTGCGCGATCTGCTCGATTCCAAAGCTGTGCCGGTCAT
CGAATTAAAAGAGATTTACCGGCAGGCGGAAGGCTCGTCGATTGTGACGCTCGCCCACCAGATGAAGCAGGGCCAGTTCC
CGCAGGACATCCTGAATAAAACCGGTGACCGTTCATTTATCCGGGCCGGCACCGAACAAATTCCGTCTGTTGTGGAAGCA
GTTGTGAAAAATGCGATCACCAAAGGGCATTCCATCCGGGATATCCAAGTGCTCGCGCCGATGTACCGGGGACCAGCCGG
CATCGATGCGCTGAATAAACTCATCCAGGAACTCGTCAATGGCAATCCCGACGGTTCCCGGAAAGAGCTGACATTCGGCG
ACATTACATACCGGATCGGCGATAAAGTGCTGCAGCTCGTCAATCAGCCGGAAAGCCAGGTCTTTAACGGCGATATGGGT
GAAGTGATCGCGATTTTCAAAGCGAAAGAAAACGTGGAAAAACAGGATTTGCTCGTCGTATCGTTCGACGGCATCGAAGT
GACGTACCAGCGGAGTGATTTGAATCAGCTGACGCTCGCGTATTGCTGTTCGATTCATAAAGCGCAAGGTTCTGAATTCC
CGATTGTCGTCATGCCGGTCGTCCGGAGCTATATGAAGATGCTTCGACGCAATCTTCTGTATACCGGCATCACCCGCAGC
AAAAACTTCCTGATCCTGTGCGGTGACCCGGAAGTGTTCCGTTTCGGCATCACCCGCTCGGATGGCACGGAACGTCAGAC
GACGCTGAAGAGCCGGCTCGCCAAGCCGGTTGAAGAGAAAGCGGACGGACCGGTGCGGCTGACACCGGATAACCTGAACG
ACATCCCGCCGTTGATCGGCATGGATGGTGTGACACCGCAAGATTTCGTCGGGCGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(343-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q2KZ66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.583

100

0.559

Multiple sequence alignment