Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   B0X71_RS02275 Genome accession   NZ_CP019640
Coordinates   414093..415043 (+) Length   316 a.a.
NCBI ID   WP_077587933.1    Uniprot ID   A0A1Q2KWL0
Organism   Planococcus lenghuensis strain Y42     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409093..420043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0X71_RS02255 (B0X71_02260) hflX 409445..410716 (+) 1272 WP_077590868.1 GTPase HflX -
  B0X71_RS02265 (B0X71_02270) - 411127..412794 (-) 1668 WP_232336829.1 ABC transporter ATP-binding protein -
  B0X71_RS02270 (B0X71_02275) - 412994..413806 (+) 813 WP_077587932.1 DUF6612 family protein -
  B0X71_RS02275 (B0X71_02280) ceuB 414093..415043 (+) 951 WP_077587933.1 ABC transporter permease Machinery gene
  B0X71_RS02280 (B0X71_02285) - 415036..415986 (+) 951 WP_077587934.1 iron chelate uptake ABC transporter family permease subunit -
  B0X71_RS02285 (B0X71_02290) - 415983..416744 (+) 762 WP_077587935.1 ABC transporter ATP-binding protein -
  B0X71_RS02290 (B0X71_02295) - 416780..417724 (+) 945 WP_077587936.1 siderophore ABC transporter substrate-binding protein -
  B0X71_RS02295 (B0X71_02300) - 417768..418109 (-) 342 WP_077587937.1 general stress protein -
  B0X71_RS02300 (B0X71_02305) - 418276..418917 (+) 642 WP_077587938.1 uracil-DNA glycosylase -
  B0X71_RS02305 (B0X71_02310) zupT 419014..419823 (+) 810 WP_077587939.1 zinc transporter ZupT -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35049.37 Da        Isoelectric Point: 9.9319

>NTDB_id=217461 B0X71_RS02275 WP_077587933.1 414093..415043(+) (ceuB) [Planococcus lenghuensis strain Y42]
MKKRILIPALIILSFISLFVGVSDIRPLDLLDPGSEETQIFMISRFPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFSGASMMWQLLIAFAFALAGTFLFMQILDRIKFKDAIFIPLVGLMFGNILSSIATFFAYRADII
QNMSAWLQGDFSMIMKGSYELLYISIPVFLIAYFYANRFTVAGMGEDFARNLGMNYRTIVNIGLVLVALITVTVVLTVGM
IPFLGLIIPNIVSIFKGDHLRKTLPHTAMLGAIFLLVCDILGRLLIYPYEISISLMVGVIGSFVFLYLLFRRQAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=217461 B0X71_RS02275 WP_077587933.1 414093..415043(+) (ceuB) [Planococcus lenghuensis strain Y42]
ATGAAGAAACGCATTTTAATACCTGCATTAATCATCCTGTCGTTCATCTCTCTGTTTGTAGGTGTCAGTGATATCCGGCC
GCTGGATCTTCTGGATCCCGGATCGGAAGAAACACAGATTTTCATGATCAGCCGTTTTCCCCGGCTGGTGGCGATTTTGC
TGGCAGGGGCCGGCATGAGTATGGCGGGTCTCATCATGCAACAGCTTAGCCGGAACAAGTTTGTCTCGCCGACAACAGCT
GGCACGCTGGATGCAACAAGGCTTGGTATTCTCGTCTCGATGCTGTTGTTTTCCGGAGCATCCATGATGTGGCAGCTGCT
GATCGCATTTGCCTTTGCACTGGCCGGAACGTTTTTGTTCATGCAAATCCTGGACCGCATCAAATTCAAAGATGCCATCT
TCATCCCGCTCGTTGGGCTAATGTTCGGGAATATCCTGTCATCCATCGCGACATTCTTTGCTTACCGGGCTGACATTATT
CAAAATATGTCCGCTTGGCTGCAAGGTGATTTTTCGATGATCATGAAAGGCAGCTATGAACTTCTTTACATAAGTATTCC
GGTATTTTTGATTGCTTACTTTTATGCCAACCGCTTTACGGTTGCCGGTATGGGAGAGGATTTTGCCAGGAATCTCGGCA
TGAATTATCGGACCATTGTCAATATCGGGTTGGTTTTAGTTGCCCTTATCACAGTGACAGTCGTGCTGACAGTCGGCATG
ATTCCGTTCCTGGGCTTGATCATTCCGAATATCGTTTCGATATTCAAAGGGGACCACCTGCGGAAAACGTTGCCGCATAC
AGCGATGCTTGGTGCCATCTTCCTGCTGGTCTGCGATATTTTGGGACGATTGCTCATTTATCCGTATGAAATATCGATCA
GTCTGATGGTCGGCGTCATTGGCAGCTTTGTCTTCCTCTATTTGCTCTTTAGGAGGCAGGCGTATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q2KWL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

99.051

0.538

Multiple sequence alignment