Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   B0X71_RS00445 Genome accession   NZ_CP019640
Coordinates   87866..89236 (+) Length   456 a.a.
NCBI ID   WP_077587614.1    Uniprot ID   -
Organism   Planococcus lenghuensis strain Y42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 82866..94236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0X71_RS00425 (B0X71_00425) - 83177..83650 (+) 474 WP_077587610.1 CtsR family transcriptional regulator -
  B0X71_RS00430 (B0X71_00430) - 83665..84204 (+) 540 WP_077587611.1 UvrB/UvrC motif-containing protein -
  B0X71_RS00435 (B0X71_00435) - 84194..85285 (+) 1092 WP_077587612.1 protein arginine kinase -
  B0X71_RS00440 (B0X71_00440) clpC 85282..87744 (+) 2463 WP_077587613.1 ATP-dependent protease ATP-binding subunit ClpC -
  B0X71_RS00445 (B0X71_00445) radA 87866..89236 (+) 1371 WP_077587614.1 DNA repair protein RadA Machinery gene
  B0X71_RS00450 (B0X71_00450) - 89335..90429 (+) 1095 WP_077587615.1 PIN/TRAM domain-containing protein -
  B0X71_RS00455 (B0X71_00455) ispD 90447..91139 (+) 693 WP_077587616.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  B0X71_RS00460 (B0X71_00460) ispF 91139..91621 (+) 483 WP_077587617.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  B0X71_RS00465 (B0X71_00465) gltX 91683..93143 (+) 1461 WP_232336746.1 glutamate--tRNA ligase -
  B0X71_RS00470 (B0X71_00470) cysE 93455..94090 (+) 636 WP_077587619.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50052.61 Da        Isoelectric Point: 6.3572

>NTDB_id=217460 B0X71_RS00445 WP_077587614.1 87866..89236(+) (radA) [Planococcus lenghuensis strain Y42]
MAKKKTKFMCQECGYESPKWMGRCPGCGSWNTMVEEVEVTQAKGPRGAFQHTATAQKATPIVAVETKEAPRVQTELEELN
RVLGGGIVPGSLILIGGDPGIGKSTLLLQVSAMLANRGERVLYISGEESIRQTKLRAERLDVTSPELFIYAETNLELLHS
TIEETNPKFVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRLLEHMVDTVLYFE
GERHHTFRILRSVKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERADGASGSTIVASMEGTRPILVEVQALVTESSFN
YPKRMATGLDQNRISLLMAVLEKRAGMLLQTHDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDKPSRVHDIIIGEVGLTG
EIRRVSRIEQRVQEAAKLGFQRAIIPASNLGGWDYPEGIEIIGVENVSEALREIFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=217460 B0X71_RS00445 WP_077587614.1 87866..89236(+) (radA) [Planococcus lenghuensis strain Y42]
ATGGCAAAGAAAAAGACAAAGTTCATGTGTCAGGAATGCGGCTATGAATCCCCGAAATGGATGGGTCGCTGCCCGGGTTG
CGGCAGCTGGAATACGATGGTGGAAGAAGTCGAAGTGACACAGGCAAAAGGACCGCGCGGCGCTTTTCAGCATACAGCAA
CTGCACAAAAAGCAACGCCGATTGTGGCTGTGGAGACCAAGGAAGCTCCGCGTGTTCAGACAGAACTCGAAGAACTGAAT
CGGGTACTTGGCGGCGGAATTGTTCCGGGCTCGCTTATTCTGATCGGCGGCGATCCGGGGATTGGAAAGTCGACACTTCT
GCTCCAGGTTTCCGCCATGCTGGCTAACCGGGGAGAGCGAGTGCTCTACATCTCTGGAGAAGAATCGATCCGTCAGACGA
AACTTCGGGCAGAGCGGCTTGATGTTACATCGCCTGAGCTATTCATCTATGCAGAGACCAATCTAGAACTACTGCACAGT
ACAATTGAAGAAACCAATCCGAAATTTGTAATCGTCGATTCTATTCAAACGGTTCACCACCCTGAAGTAACATCTGCGCC
TGGCAGTGTGTCACAGGTGAGGGAATGTACAGCAGAACTGATGCGCATTGCAAAAACAAAGAATATTGCCATCTTTCTGG
TGGGGCATGTTACAAAAGAAGGACAAATTGCAGGTCCGCGTCTCCTTGAGCATATGGTGGATACTGTCTTGTATTTTGAA
GGAGAACGGCATCACACGTTCCGAATTCTCCGGAGCGTAAAAAACCGGTTTGGATCAACAAATGAGATCGCCATTTTTGA
GATGCTTCAAGGTGGGTTGAAAGAAGTGCTGAATCCCTCTGAATTATTCTTGCAAGAGCGAGCGGACGGGGCATCCGGTT
CGACAATTGTTGCATCGATGGAAGGCACGCGACCGATTTTGGTGGAAGTTCAAGCACTTGTAACAGAATCAAGTTTTAAT
TATCCAAAGCGAATGGCGACCGGGCTTGACCAGAACCGGATTTCACTCTTGATGGCAGTGCTTGAAAAGCGCGCAGGAAT
GCTTTTGCAGACGCATGATGCTTATATTAAAGTAGCCGGTGGTGTGAAGCTGGATGAACCGGCGATCGATCTGGCTGTCC
TTGCGAGCATTGTCTCAAGCTTTCGCGATAAGCCATCGAGAGTTCACGATATCATTATTGGAGAAGTCGGCCTGACCGGT
GAGATTCGGCGAGTATCCCGCATTGAGCAGCGCGTGCAAGAAGCGGCAAAGCTCGGCTTCCAGCGGGCAATCATTCCGGC
ATCCAACTTGGGTGGTTGGGACTATCCGGAAGGCATTGAAATCATCGGTGTTGAAAATGTCAGTGAGGCGTTGCGAGAAA
TTTTTTCATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.744

99.342

0.713
  radA Streptococcus pneumoniae Rx1

63.816

100

0.638
  radA Streptococcus pneumoniae D39

63.816

100

0.638
  radA Streptococcus pneumoniae R6

63.816

100

0.638
  radA Streptococcus pneumoniae TIGR4

63.816

100

0.638
  radA Streptococcus mitis NCTC 12261

63.816

100

0.638
  radA Streptococcus mitis SK321

63.816

100

0.638

Multiple sequence alignment