Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   CW750_RS09865 Genome accession   NZ_CP025136
Coordinates   1973720..1974766 (-) Length   348 a.a.
NCBI ID   WP_061826983.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0072     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1968720..1979766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW750_RS09840 (CW750_09850) rpsT 1968781..1969035 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  CW750_RS09845 (CW750_09855) holA 1969104..1970132 (-) 1029 WP_061826985.1 DNA polymerase III subunit delta -
  CW750_RS09850 (CW750_09860) comEC 1970129..1972195 (-) 2067 WP_226474266.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CW750_RS09855 (CW750_09865) - 1972393..1972881 (-) 489 WP_011374770.1 ComE operon protein 2 -
  CW750_RS09860 (CW750_09870) comEA 1972939..1973646 (-) 708 WP_226474265.1 helix-hairpin-helix domain-containing protein Machinery gene
  CW750_RS09865 (CW750_09875) sepM 1973720..1974766 (-) 1047 WP_061826983.1 SepM family pheromone-processing serine protease Regulator
  CW750_RS09870 (CW750_09880) coaD 1974768..1975265 (-) 498 WP_061826982.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38160.00 Da        Isoelectric Point: 9.6893

>NTDB_id=217443 CW750_RS09865 WP_061826983.1 1973720..1974766(-) (sepM) [Latilactobacillus sakei strain WiKim0072]
MPKNKKLTKRLIVIVVLIIVAVVCLMPTGYYIEGAGTAENTSQYVKVDGKHDHQKGHFMLTTVGVRGPVTPLQLLLSKTQ
PFTEIESRDELMGNEDTEAYEQIQKYYMDSSINAAVEAAYKKADKAYNTKYLGVYVMSMLGNSTFKDDLAVGDTITAIDH
HQFKNANAFVKYVQGLKVGQKVTVSYDHGQKHQTATHRLIKLLRTHHPGLGITLTDHSKIETDIPVKIDAGDIGGPSAGL
MFTLQVYNQLTKQNLQKGRKIAGTGTMAADGTVGAIGGIDKKVLVASQEGATVFFAPNDPVTKAILKVDPDYQNNYTIAK
NAAKKIHTKMKIVPVKTLDDALTYLKNH

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=217443 CW750_RS09865 WP_061826983.1 1973720..1974766(-) (sepM) [Latilactobacillus sakei strain WiKim0072]
ATGCCAAAAAATAAGAAACTGACAAAACGATTAATTGTAATTGTGGTTTTAATCATTGTTGCAGTTGTTTGTTTAATGCC
CACTGGCTATTATATTGAAGGTGCCGGGACCGCAGAAAATACCAGCCAATATGTTAAGGTCGACGGTAAACATGATCATC
AAAAAGGCCATTTTATGCTGACAACTGTTGGTGTCAGAGGTCCAGTAACACCGTTGCAATTATTATTGTCCAAGACGCAA
CCTTTTACGGAAATTGAAAGTCGTGACGAATTGATGGGCAATGAAGATACCGAAGCTTACGAACAGATTCAAAAGTACTA
TATGGATAGTTCAATTAACGCTGCCGTTGAAGCCGCCTATAAAAAAGCTGATAAGGCCTACAATACGAAGTATCTGGGCG
TTTATGTGATGTCGATGTTAGGCAACTCCACTTTTAAAGATGATTTAGCAGTCGGTGATACGATTACCGCGATTGATCAT
CATCAATTTAAAAATGCCAATGCTTTTGTAAAGTATGTCCAAGGTTTGAAAGTTGGTCAAAAGGTCACGGTTAGTTACGA
TCATGGTCAAAAACATCAAACGGCAACGCATCGTTTGATTAAATTACTAAGGACGCATCATCCGGGCCTCGGGATTACGT
TAACAGATCATTCTAAAATCGAAACCGATATCCCGGTTAAAATTGATGCCGGTGATATTGGGGGCCCATCTGCAGGCTTG
ATGTTTACGTTGCAAGTTTATAATCAATTAACGAAGCAAAATCTCCAAAAGGGTCGTAAAATTGCGGGGACCGGCACAAT
GGCTGCTGATGGCACTGTAGGTGCTATTGGTGGGATTGATAAAAAGGTACTGGTCGCTAGTCAAGAAGGCGCAACCGTCT
TTTTTGCACCTAATGATCCTGTAACAAAGGCAATTTTAAAGGTTGATCCTGATTATCAAAATAATTATACAATCGCTAAA
AATGCCGCTAAAAAAATTCATACTAAGATGAAGATCGTACCGGTCAAAACCTTAGATGATGCGTTAACTTATTTGAAAAA
TCATTAA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(132-196)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(202-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

44.253

100

0.443

Multiple sequence alignment