Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CW750_RS07665 Genome accession   NZ_CP025136
Coordinates   1542387..1544090 (+) Length   567 a.a.
NCBI ID   WP_129584120.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0072     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1537387..1549090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW750_RS07635 (CW750_07635) folD 1537705..1538520 (+) 816 WP_229295535.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  CW750_RS07640 (CW750_07640) xseA 1538513..1539862 (+) 1350 WP_016264852.1 exodeoxyribonuclease VII large subunit -
  CW750_RS07645 (CW750_07645) - 1539864..1540094 (+) 231 WP_016264853.1 exodeoxyribonuclease VII small subunit -
  CW750_RS07650 (CW750_07650) - 1540094..1540966 (+) 873 WP_129584119.1 polyprenyl synthetase family protein -
  CW750_RS07655 (CW750_07655) - 1540975..1541805 (+) 831 WP_025015873.1 TlyA family RNA methyltransferase -
  CW750_RS07660 (CW750_07660) argR 1541885..1542337 (+) 453 WP_025015872.1 arginine repressor -
  CW750_RS07665 (CW750_07665) recN 1542387..1544090 (+) 1704 WP_129584120.1 DNA repair protein RecN Machinery gene
  CW750_RS07670 (CW750_07670) - 1544149..1544472 (-) 324 WP_025015871.1 hypothetical protein -
  CW750_RS07675 (CW750_07675) - 1544592..1544819 (+) 228 WP_197703335.1 YdbC family protein -
  CW750_RS07680 (CW750_07680) gmk 1544892..1545503 (+) 612 WP_011374394.1 guanylate kinase -
  CW750_RS07685 (CW750_07685) rpoZ 1545508..1545765 (+) 258 WP_011374395.1 DNA-directed RNA polymerase subunit omega -
  CW750_RS07690 (CW750_07690) coaBC 1545854..1547071 (+) 1218 WP_016264860.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63222.20 Da        Isoelectric Point: 4.6999

>NTDB_id=217420 CW750_RS07665 WP_129584120.1 1542387..1544090(+) (recN) [Latilactobacillus sakei strain WiKim0072]
MLQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGRGSQDFIRTGAKKATLEGLFTLPENGTTAALL
AEYGIEHDDQTILLQRDLALNGHNVCRVNGHLVNTTTLKKIGETLVDIHGQNEHQELMYPDRHLGLLDEFAHTTLASAKA
AYQETYQAYRQTEKALKKKQQNEQEWAQRLDMLKFQTNEIDAAQLQPDEESKLIEERAKLSNFQRINQALQASRAILSGE
EGNALDQIAIAMNQMQEIAELDPEFKRIADNLQTGYYTLQDSGSDISREVDNLEWDEARLDEIEQRLETINNLEHKYGDS
IPEILAYGAQITKELQAMQATEANASELEQQFEQQQAQLLQEAAVLSEKRQAAAQQLEKAVHQQLKALYMAKTVFKVEFA
TVDDQQFMRSGRDKVEFYIQPNPGEKLRPLAKTASGGELSRLMLALKTIFSESQGVTSIIFDEVDTGVSGRVAQAIANKI
SEIAQHSQVLCITHLPQVAAMSDHQYQIQKQIKQNRTETSIQKVTGKKRVAELARMLAGTEVTELTLEHAQELVDLAETA
KAQIRQA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=217420 CW750_RS07665 WP_129584120.1 1542387..1544090(+) (recN) [Latilactobacillus sakei strain WiKim0072]
ATGCTACAAGAATTAGTCATTCACGACTTTGCAATTATAGATCAATTGGCCATTAGTTTCGATGAAGGGATGACGGTTCT
TTCTGGTGAAACTGGGGCCGGGAAATCGATTATTATCGACGCGGTTGGCCTACTCGCTGGTGGTCGGGGGTCACAGGATT
TCATCCGAACCGGTGCGAAAAAAGCGACGTTAGAGGGCTTGTTCACATTACCCGAAAACGGCACGACTGCCGCGCTTTTA
GCTGAATATGGGATTGAACACGATGATCAAACCATTTTATTACAACGTGATTTGGCATTAAACGGGCATAATGTTTGCCG
CGTTAATGGGCATCTGGTCAATACCACGACGCTTAAAAAGATTGGAGAAACATTAGTTGATATTCACGGTCAAAACGAAC
ATCAAGAATTAATGTATCCTGATCGCCATCTAGGCTTGTTGGATGAGTTTGCCCACACAACCTTGGCGAGTGCTAAGGCG
GCCTATCAAGAAACCTATCAGGCTTACCGGCAAACGGAAAAAGCGTTGAAGAAGAAACAACAAAATGAGCAGGAATGGGC
CCAACGCCTTGATATGCTTAAATTTCAAACTAATGAAATTGACGCCGCGCAATTACAACCAGATGAAGAAAGTAAGTTAA
TCGAAGAACGCGCGAAACTCAGCAACTTCCAACGGATTAATCAGGCCTTGCAAGCTAGTCGCGCCATTTTATCTGGTGAA
GAAGGCAACGCGCTAGATCAAATCGCGATTGCGATGAATCAGATGCAAGAAATCGCGGAATTAGATCCTGAATTCAAAAG
AATTGCCGATAATCTACAAACAGGCTATTACACACTGCAAGATAGCGGTAGTGATATTAGTCGGGAAGTCGATAATCTTG
AATGGGACGAAGCGCGCTTGGATGAAATTGAACAGCGCTTAGAAACGATCAATAATCTCGAACATAAATATGGCGATTCA
ATTCCTGAAATCTTAGCTTATGGGGCGCAAATTACCAAAGAATTGCAAGCGATGCAGGCCACAGAAGCCAATGCAAGCGA
ATTAGAGCAACAATTTGAACAACAACAAGCCCAATTGCTGCAAGAAGCAGCCGTTCTTTCTGAGAAACGCCAAGCTGCTG
CTCAACAGTTGGAAAAGGCTGTTCACCAACAACTCAAAGCTCTCTATATGGCTAAAACGGTTTTCAAAGTTGAATTTGCC
ACGGTTGATGACCAGCAATTTATGCGTAGTGGTCGGGACAAAGTTGAATTTTATATTCAACCTAATCCGGGTGAGAAGCT
ACGGCCGCTTGCCAAGACTGCTTCTGGTGGGGAATTATCCCGATTGATGTTGGCGCTTAAAACGATTTTCTCAGAATCAC
AAGGCGTTACCAGCATTATTTTTGATGAAGTTGATACTGGGGTCAGTGGGCGTGTTGCGCAAGCAATTGCCAATAAAATT
AGCGAAATTGCCCAACACTCACAAGTCCTCTGTATTACGCATTTGCCACAAGTAGCGGCGATGAGTGATCATCAATACCA
AATTCAAAAACAAATTAAACAAAACCGCACAGAAACATCAATCCAAAAGGTAACCGGTAAAAAACGCGTTGCTGAACTGG
CTCGTATGTTGGCGGGGACAGAAGTGACGGAATTAACGCTAGAACACGCCCAAGAATTAGTGGACCTCGCAGAAACTGCT
AAAGCACAGATTAGACAAGCTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.819

100

0.464

Multiple sequence alignment