Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   CW750_RS04505 Genome accession   NZ_CP025136
Coordinates   906070..906876 (+) Length   268 a.a.
NCBI ID   WP_016264363.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0072     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 901070..911876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW750_RS04485 (CW750_04485) yycF 901267..901980 (+) 714 WP_011373790.1 response regulator YycF -
  CW750_RS04490 (CW750_04490) walK 901990..903888 (+) 1899 WP_011373791.1 cell wall metabolism sensor histidine kinase WalK -
  CW750_RS04495 (CW750_04495) yycH 903878..905209 (+) 1332 WP_035147594.1 two-component system activity regulator YycH -
  CW750_RS04500 (CW750_04500) - 905214..906035 (+) 822 WP_035147596.1 two-component system regulatory protein YycI -
  CW750_RS04505 (CW750_04505) vicX 906070..906876 (+) 807 WP_016264363.1 MBL fold metallo-hydrolase Regulator
  CW750_RS04510 (CW750_04510) htrA 907010..908269 (+) 1260 WP_025016471.1 trypsin-like peptidase domain-containing protein Regulator
  CW750_RS04515 (CW750_04515) rlmH 908814..909293 (+) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  CW750_RS04520 (CW750_04520) - 909433..910092 (+) 660 WP_025016470.1 hypothetical protein -
  CW750_RS04525 (CW750_04525) add 910149..911174 (-) 1026 WP_035147601.1 adenosine deaminase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29695.31 Da        Isoelectric Point: 5.0059

>NTDB_id=217395 CW750_RS04505 WP_016264363.1 906070..906876(+) (vicX) [Latilactobacillus sakei strain WiKim0072]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKDVDSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=217395 CW750_RS04505 WP_016264363.1 906070..906876(+) (vicX) [Latilactobacillus sakei strain WiKim0072]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
TCAAAAAATATTAGTCGACGCGGGAATGAGCGGTAAACGCGTTCAGGATTTAATGCACAGTATCGGTCGGGATTTAAAGG
ATGTTGACAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGTGGCGTGGGTGTTTTAGCCCGCCGGTATGGGATT
GATGTGTATGCTAACCAACCGACTTGGGATGCGATGGCGTCAATTATTGGGACCGTTCCTGATGAACATAAGCACGTCTT
TGAGATGGGTAAAACCAAAACACTCGGTGATATCGATGTTGAAAGTTATGGCGTTTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAATAACCGAGCCTTCGCAATCTTAACGGATACGGGTTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCGGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGAATGGGTAAGTACCCTTGGTCGCT
TAAACAACGTATTCTTAGTGATACGGGTCATCTATCTAACGAAGATGGGGCTTCAGCCTTAATGGCCTTTATGGGACAAC
AAACAAAGCGTGTTTTCCTAGGTCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCATCAATT
TTAGAACAACATGATTACGGTGTTGGCACGGATTTTGAAATTTTGGATACTGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.459

96.642

0.575