Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CW750_RS04230 Genome accession   NZ_CP025136
Coordinates   854490..855365 (+) Length   291 a.a.
NCBI ID   WP_129584097.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0072     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 849490..860365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW750_RS04210 (CW750_04210) - 850373..851680 (-) 1308 WP_099735356.1 nucleobase:cation symporter-2 family protein -
  CW750_RS04215 (CW750_04215) rsmG 852082..852822 (+) 741 WP_011373731.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  CW750_RS04220 (CW750_04220) noc 852822..853721 (+) 900 WP_016264317.1 nucleoid occlusion protein -
  CW750_RS04225 (CW750_04225) - 853733..854500 (+) 768 WP_016264318.1 AAA family ATPase -
  CW750_RS04230 (CW750_04230) spo0J 854490..855365 (+) 876 WP_129584097.1 ParB/RepB/Spo0J family partition protein Regulator
  CW750_RS04235 (CW750_04235) - 855384..855632 (+) 249 WP_016264320.1 DUF951 domain-containing protein -
  CW750_RS04240 (CW750_04240) ychF 855656..856756 (+) 1101 WP_011373736.1 redox-regulated ATPase YchF -
  CW750_RS04245 (CW750_04245) - 856774..857448 (+) 675 WP_016264321.1 DUF1129 domain-containing protein -
  CW750_RS04250 (CW750_04250) - 857485..858249 (+) 765 WP_035145482.1 prolyl oligopeptidase family serine peptidase -
  CW750_RS04255 (CW750_04255) - 858630..859298 (+) 669 WP_016264323.1 HAD hydrolase-like protein -
  CW750_RS04260 (CW750_04260) nrdI 859295..859762 (-) 468 WP_016264324.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32437.47 Da        Isoelectric Point: 9.8304

>NTDB_id=217393 CW750_RS04230 WP_129584097.1 854490..855365(+) (spo0J) [Latilactobacillus sakei strain WiKim0072]
MVNKNGKGLGRGLEAVFLAFEGPNKNRADELVEEIALEDIRPNPYQPRKTFDEAALAELAASIKKSGVFQPIIVRKSING
YELIAGERRFRASKLAGKTTIPAITRQFDEEAMMEIAVLENLQREDLTPLEEAQAYDTLLKKLNLTQAEVSERLGKSRPY
IANYLRLLGLPADVKQLLQEGQLSMGQARTLLSLKKKSQISALAKRTIAESLTVRQLEQLVNQMNQTKAAKVAKTKIKSP
YIQASENQLVDKFDTKVNIAMNSKGRGKIEIDYGTVEDLNRILALLDVNID

Nucleotide


Download         Length: 876 bp        

>NTDB_id=217393 CW750_RS04230 WP_129584097.1 854490..855365(+) (spo0J) [Latilactobacillus sakei strain WiKim0072]
ATGGTCAATAAAAATGGTAAAGGACTCGGTCGAGGACTCGAAGCTGTTTTTTTAGCATTTGAAGGACCCAATAAGAATCG
TGCGGATGAACTCGTTGAAGAGATTGCCCTCGAGGATATTCGTCCTAATCCTTATCAACCACGTAAAACGTTTGATGAAG
CGGCACTAGCGGAACTTGCTGCTTCCATTAAAAAATCAGGCGTTTTCCAACCGATTATTGTGCGTAAAAGCATTAATGGT
TACGAATTAATCGCTGGCGAACGTCGTTTCCGTGCTTCTAAATTAGCTGGCAAAACTACGATTCCAGCGATTACCCGTCA
ATTCGATGAAGAAGCGATGATGGAAATTGCAGTCTTGGAAAATCTTCAACGGGAAGATTTAACACCGCTAGAAGAAGCGC
AAGCCTACGACACCCTTTTGAAGAAGTTAAACTTAACGCAAGCTGAAGTGTCAGAACGCTTAGGCAAGAGTCGCCCTTAC
ATTGCCAATTACTTACGCCTGTTGGGCTTGCCAGCAGATGTTAAGCAATTGTTGCAAGAAGGCCAACTCTCAATGGGACA
AGCACGGACGCTTTTATCATTGAAGAAAAAGAGTCAAATTAGCGCCCTCGCCAAGCGGACGATTGCCGAAAGTTTAACGG
TGCGCCAATTAGAACAACTCGTCAACCAAATGAATCAAACCAAAGCGGCTAAAGTCGCTAAGACTAAGATTAAATCACCT
TACATTCAAGCGAGTGAAAACCAATTAGTTGATAAATTCGATACCAAGGTTAATATTGCGATGAACAGTAAGGGCCGGGG
GAAAATCGAAATTGATTACGGCACGGTAGAGGATTTAAACCGAATCTTGGCTTTACTAGATGTCAATATTGATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(139-166)

HTH domain found in ParB protein (HTH_ParB)

(173-223)

ParB/Sulfiredoxin domain (ParB_N)

(33-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.629

86.254

0.368

Multiple sequence alignment