Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   BZ167_RS11510 Genome accession   NZ_CP019626
Coordinates   2384028..2385173 (-) Length   381 a.a.
NCBI ID   WP_015418439.1    Uniprot ID   -
Organism   Bacillus sp. 275     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2379028..2390173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZ167_RS11460 (BZ167_11505) speE 2379324..2380154 (+) 831 WP_003151052.1 spermidine synthase -
  BZ167_RS11465 (BZ167_11510) speB 2380213..2381085 (+) 873 WP_007407646.1 agmatinase -
  BZ167_RS11470 (BZ167_11515) - 2381253..2381471 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  BZ167_RS11480 (BZ167_11525) - 2382062..2382574 (-) 513 WP_031378560.1 stage II sporulation protein M -
  BZ167_RS11485 (BZ167_11530) - 2382618..2382899 (-) 282 WP_007407643.1 hypothetical protein -
  BZ167_RS11490 (BZ167_11535) - 2383087..2383272 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  BZ167_RS11495 (BZ167_11540) - 2383307..2383510 (-) 204 WP_007407641.1 hypothetical protein -
  BZ167_RS11500 (BZ167_11545) - 2383524..2383727 (-) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  BZ167_RS11505 (BZ167_11550) phrF 2383925..2384044 (-) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BZ167_RS11510 (BZ167_11555) rapF 2384028..2385173 (-) 1146 WP_015418439.1 tetratricopeptide repeat protein Regulator
  BZ167_RS11520 (BZ167_11565) - 2385404..2386759 (+) 1356 WP_077392085.1 YncE family protein -
  BZ167_RS11525 (BZ167_11570) - 2386799..2388175 (+) 1377 WP_061860962.1 YncE family protein -
  BZ167_RS11530 (BZ167_11575) - 2388182..2388694 (-) 513 Protein_2208 bacteriocin biosynthesis protein AlbG -
  BZ167_RS11535 (BZ167_11580) - 2388848..2389276 (+) 429 WP_007407634.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45569.65 Da        Isoelectric Point: 4.5769

>NTDB_id=217358 BZ167_RS11510 WP_015418439.1 2384028..2385173(-) (rapF) [Bacillus sp. 275]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=217358 BZ167_RS11510 WP_015418439.1 2384028..2385173(-) (rapF) [Bacillus sp. 275]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCATAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTATTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564

Multiple sequence alignment